PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000146415 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 234aa MW: 26569.6 Da PI: 10.8364 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.9 | 4e-21 | 162 | 204 | 3 | 45 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 en+ rq t++kR+ngi+KKA+ELS+LCd+++ +++fs+tgk MDP0000146415 162 LENTNGRQATYAKRKNGIMKKANELSILCDIDIVLLMFSPTGK 204 589999***********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 5.1E-22 | 152 | 210 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.352 | 152 | 204 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.5E-27 | 152 | 211 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 2.74E-21 | 153 | 205 | No hit | No description |
PRINTS | PR00404 | 9.0E-17 | 154 | 174 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.0E-19 | 163 | 205 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.0E-17 | 174 | 189 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.0E-17 | 189 | 210 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MKVHIGKVQG RHSLPALTAR DPDPITKACS NGPITGQDTI GRVSELRFDC QKGMLIGIVR 60 KRCGRRKKTR VVDQQHKSDE EETFHFFPGK YLTFLSCICI TTPPPNHHQA FNQYCSFFRV 120 NDNGRKIPSF SIFWTVKEGE FKRKIRGPKC RMGRVKLKIK GLENTNGRQA TYAKRKNGIM 180 KKANELSILC DIDIVLLMFS PTGKPSLCXG EGRKEQGRKE GRNGRRSNGE GRKE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03060.2 | 8e-29 | AGAMOUS-like 30 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000146415 |