PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000145937
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 448aa    MW: 49207.9 Da    PI: 7.4998
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000145937genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.54.8e-08352392954
                    HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     r+RR+ri +++  L++++P        K++ a++L +A +Y+k L
  MDP0000145937 352 ARQRRERISERIRILQRMVPGG-----SKMDTASMLDEAANYLKFL 392
                    69******************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.977343392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-11349406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.13E-13349406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-12349398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-5352392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.37E-4366397No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MDGLDWDDGS HITNTSTLLW SNQVHNLEEL LVSNSSFSAL IPIQGLPKVQ TSHAIMNSNT  60
KKPSSIGSHQ IANQKNPCGL ESVHVMPTLR AGESCQTPLK VNRTYNLMSS LSTGTFMAAD  120
LYGNLEKYVQ LQANVQGLQD HHVKAKPATM HSVDSLDCLL SATNSNTDTS VEDDDGISML  180
FSDCRSNLWN FGAGNNSAIS SGGSENTETV VSQSSSDLYV QSQGKLNSTK RSHDQSEPKL  240
HGANYSHLGL LQTDYSSTSE GGFRLISDNP PKTKKPRSDN KRPSSSNISF QQPTSSVSTS  300
SIEEPDPEVI AQMKEMIYRA AAFRPVNLGL ELVERPKRKN VKISSDPQTV AARQRRERIS  360
ERIRILQRMV PGGSKMDTAS MLDEAANYLK FLRAQVKALE NLGQKIESMS NSNIPTTSFA  420
FSFNPSFPMQ THNHVPLQNP NHIHQPHG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1352357RQRRER
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009338143.10.0PREDICTED: transcription factor bHLH87
SwissprotQ8S3D24e-91BH087_ARATH; Transcription factor bHLH87
TrEMBLA0A498HDV10.0A0A498HDV1_MALDO; Uncharacterized protein
STRINGXP_009338143.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45303257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.17e-76bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]