PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000145050
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB
Protein Properties Length: 300aa    MW: 33637.2 Da    PI: 6.2803
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000145050genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd +lv +++q+G g+W++ ++  g+ R++k+c++rw +yl
    MDP0000145050 14 KGIWTPEEDHILVTYIQQHGHGNWRALPKLAGLLRCGKSCRLRWTNYL 61
                     678*****************************99************97 PP
2Myb_DNA-binding50.35.3e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE++ ++++++ lG++ W+ Ia++++ gRt++++k+ w+++l
    MDP0000145050  67 RGNFSKEEEDTIINLHQILGNR-WSQIAARLP-GRTDNEIKNVWHTHL 112
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-24564IPR009057Homeodomain-like
PROSITE profilePS5129415.535961IPR017930Myb domain
SuperFamilySSF466898.46E-3110108IPR009057Homeodomain-like
SMARTSM007171.3E-121363IPR001005SANT/Myb domain
PfamPF002492.0E-151461IPR001005SANT/Myb domain
CDDcd001671.20E-101761No hitNo description
PROSITE profilePS5129425.4262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2665117IPR009057Homeodomain-like
SMARTSM007171.6E-1466114IPR001005SANT/Myb domain
PfamPF002491.2E-1467112IPR001005SANT/Myb domain
CDDcd001671.11E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MVRAPCCAKM GLKKGIWTPE EDHILVTYIQ QHGHGNWRAL PKLAGLLRCG KSCRLRWTNY  60
LRPDIKRGNF SKEEEDTIIN LHQILGNRWS QIAARLPGRT DNEIKNVWHT HLKKKLKSNH  120
TEPESKPHFY SIKMEQELDP VDNSSCYAKS ESLDCGPVSP SQCTSSGTSS VTTGDDDNNN  180
NDACMKFDDY QTNLPVADDS FWSEVLSAGN SDEIVNEFQA FGGDPRVNVG PTDGGFSLDM  240
YNDNNMDFWF NNFLGAGEIP ELXTTSDKPX LSTSSGAKKS HXCISTXXXH KSXFHTSXXF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25121165108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117LKKKLKS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.250140.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Fades out in old roots and leaves. {ECO:0000269|PubMed:24415840}.
UniprotTISSUE SPECIFICITY: Expressed in imbibed seeds, hypocotyls, cotyledons, roots, seedlings, siliques and flowers. {ECO:0000269|PubMed:24415840}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ8601345e-54FJ860134.1 Prunus persica isolate pkMYB1 myb transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008364260.10.0transcription factor MYB30-like
SwissprotQ9SJX81e-77MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A498JT981e-174A0A498JT98_MALDO; Uncharacterized protein
STRINGXP_008364260.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.17e-72myb domain protein 15
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]