PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000144744
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB
Protein Properties Length: 342aa    MW: 37785.9 Da    PI: 7.325
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000144744genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.7e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd  lv +++++G+g+W++++   g++R+ k+c++rw +yl
    MDP0000144744 14 KGPWTPEEDISLVSYIQEHGPGNWRAVPTNTGLHRCSKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding48.32.3e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T  E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
    MDP0000144744  67 RGNFTDHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.5E-24564IPR009057Homeodomain-like
PROSITE profilePS5129425.295965IPR017930Myb domain
SuperFamilySSF466891.45E-3011108IPR009057Homeodomain-like
SMARTSM007174.0E-141363IPR001005SANT/Myb domain
PfamPF002499.5E-161461IPR001005SANT/Myb domain
CDDcd001674.16E-111661No hitNo description
Gene3DG3DSA:1.10.10.601.8E-2465117IPR009057Homeodomain-like
PROSITE profilePS5129419.266116IPR017930Myb domain
SMARTSM007175.5E-1566114IPR001005SANT/Myb domain
PfamPF002499.0E-1467112IPR001005SANT/Myb domain
CDDcd001673.31E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0080167Biological Processresponse to karrikin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MGRPPCCDKE GIKKGPWTPE EDISLVSYIQ EHGPGNWRAV PTNTGLHRCS KSCRLRWTNY  60
LRPGIKRGNF TDHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLRKKLIKLQ  120
AAGGGTEGLH SKDQGNSNSS SQAISRGQWE RRLQTDIHMA RQALRDALSP EKPLALSSDL  180
NPADGFSISN LKNPTLDQSS NSTYASSTEN ISRLLKGWMK NPPNKSARLT NLANNQTDYQ  240
HYSSSEGTTS VANTANSGNV ELSDTFESLF GFESSNSDLS PSMSPEASLF QGESKPDLIS  300
GQLPLSFLEK WLFDEGAAAA ALGKDHFFSD TVTPDHGNAN FF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-26141164105C-Myb DNA-Binding Domain
1msf_C3e-26141164105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.302430.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in flowers, leaves and weakly in seed pods. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00395DAPTransfer from AT3G47600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028953285.10.0myb-related protein 306-like
SwissprotP813921e-112MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A498HK490.0A0A498HK49_MALDO; Uncharacterized protein
STRINGXP_008341573.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101634115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.11e-108myb domain protein 94
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]