PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000143208
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 533aa    MW: 58444.3 Da    PI: 7.8277
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000143208genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.74.2e-082442761955
                    HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     f+ Lrel+P++    ++K +Ka+ L +++eYI+ Lq
  MDP0000143208 244 TFQMLRELIPHS----DQKRDKASFLLEVIEYIQFLQ 276
                    699********9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.29E-10243296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-5244276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-12244293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.99E-6245279No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MELPQPRPFG TEGRKPTHDF LSLCAHSVAQ QDPRPPAQGR YLETHDFLRP LERMGKPCIA  60
KEETSVEIST AEKQPSHAAA QPTTSVEHIL PGGIGTYSIS HISYFNQRVP KPEGSPVFTV  120
GQASSGERNV DENSNCSSYT GSGFTLWEES AKNKGKTGKE NVVGERPLGT VRGQWTSSER  180
PAQSSSNNHR SCFSSQSSGQ KNISFMEMMK YAAKGSAQEA ELDDEEEFVL KKETSTTTTN  240
ATTTFQMLRE LIPHSDQKRD KASFLLEVIE YIQFLQERVN KYEGPYQGWN HDPAKLMPWI  300
NNHKLKESYC DQSRGMNGVS GPALPFAAKF DEKPTSVSPT IPASCAQNPV ESDTSTETTF  360
KAVDHHPGIT SKSMPFPLSM QPNLFAPVRS SAAAAAVPPI PPRLPSDAEN TSQHRSMLCQ  420
TRSCATDGTA TRDKLKEQEL TIEGGRINIS SAYSQGLLNT LTQALQSSGV DLSQASISVK  480
IELGKRANRR SPIPKSAIKE NEIPTSTLGK KHSVIASSEE SEQAQKKLKT FRN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.164890.0fruit| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008374672.10.0transcription factor BIM1-like isoform X1
TrEMBLA0A498JN610.0A0A498JN61_MALDO; Uncharacterized protein
STRINGXP_008374672.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72523145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.46e-99bHLH family protein