PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000140609
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB
Protein Properties Length: 328aa    MW: 37204.4 Da    PI: 6.7919
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000140609genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.7e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed+ l +++k++G g+W+  ++  g++R++k+c++rw++yl
    MDP0000140609 14 RGAWTAHEDKVLTEYIKLHGEGRWRNLPKNAGLNRCGKSCRLRWLNYL 61
                     89********************************************97 PP
2Myb_DNA-binding53.17.4e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ +++E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ 
    MDP0000140609  67 RGNISPDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111
                      7899******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.487961IPR017930Myb domain
SuperFamilySSF466897.7E-2912108IPR009057Homeodomain-like
SMARTSM007171.5E-131363IPR001005SANT/Myb domain
PfamPF002495.6E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-231568IPR009057Homeodomain-like
CDDcd001672.48E-101661No hitNo description
PROSITE profilePS5129425.4262116IPR017930Myb domain
SMARTSM007175.3E-1666114IPR001005SANT/Myb domain
PfamPF002494.5E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2469116IPR009057Homeodomain-like
CDDcd001672.46E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MGRSPCCAKE GMNRGAWTAH EDKVLTEYIK LHGEGRWRNL PKNAGLNRCG KSCRLRWLNY  60
LRPDIKRGNI SPDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NLGKKVHDHQ  120
QQGSASDLKH HKNGEPNSKK AKMMDMAXXS SHVVRTKAAK CTKVFINPHP HKXPLGHNHQ  180
XYXEETNAGG LMFDDKPAAM DDDHINRTRS FSSFSNINAD QENSTSDFLV DFDMDEISLA  240
NLLNSDXXEI NHDDLNHISS DNVMSRCVDE TAQFFSEGML QHWXNGXSDX GDDRVQVQPN  300
FILNFHSFXS FLGSDHQGEE CLGVGXSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.224500.0fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028944744.10.0transcription repressor MYB5-like
TrEMBLA0A498KK390.0A0A498KK39_MALDO; Uncharacterized protein
STRINGXP_009361685.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.14e-62MYB family protein