PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000139773
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 280aa    MW: 30639.9 Da    PI: 9.5567
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000139773genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM43.59.8e-1414320369128
            NAM  69 atgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    ++++  n+a+++g+ k t +++e+ ++ +++++g k++L+fy+gr pk++ktdWv+hey l
  MDP0000139773 143 SNSTCCNQAMDQGFYKITRNEREIRAEeSKAVIGKKRILTFYEGRVPKAKKTDWVVHEYYL 203
                    45566788999**************98566779**************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF012681.4E-71964IPR000559Formate-tetrahydrofolate ligase, FTHFS
Gene3DG3DSA:3.40.50.3003.1E-43065IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF1019419.68E-2184204IPR003441NAC domain
PROSITE profilePS5100518.91292223IPR003441NAC domain
PfamPF023651.8E-1094202IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009396Biological Processfolic acid-containing compound biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0004329Molecular Functionformate-tetrahydrofolate ligase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MSSSSKTARK LQMALPVPAD IDIANSIKPL HISEIAKELN LNPDHYDLYG KYKAKVLLSV  60
IDELKGFGWR EMSSSSNFII GRGNAVHANV ILLPSVKFNL TDELLVSYYL RSKIQGTGSL  120
FRHTILKIDV CKYESFGPTT STSNSTCCNQ AMDQGFYKIT RNEREIRAEE SKAVIGKKRI  180
LTFYEGRVPK AKKTDWVVHE YYLIKIEMGS RPTKQMTSRT GMSSGSSSAA PASEKEPTPP  240
ASATSSASLT SPPVISSATS WLLPTPTTVG EHGNHDCGSG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.140821e-100fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF9687650.0HF968765.1 Malus x domestica metacontig of the Co-Gene region, cultivar Procats28, columnar allele.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008343469.21e-68protein NTM1-like 9
TrEMBLW0UT010.0W0UT01_MALDO; Uncharacterized protein
STRINGXP_008349070.11e-101(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13710524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.12e-16NAC transcription factor-like 9