PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000139206

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bHLH

Protein Properties

Length: 358aa MW: 38601.6 Da PI: 6.7906

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000139206	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.2	5.2e-07	149	250	5	53
HHHHHHHHHHHHHHHHHHHHCTSCC.C......................................................TTS-.STCHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.as...................................................kapskK.lsKaeiLekA 47 h+++Er RR+ri +++ L+el+P+ + + +K + a++L + MDP0000139206 149 HSIAERLRRERIAERIRALQELVPSvNKkvlrhilyleccsevhcmkkiwglnhftqnstelvskstqwvacdflsdnvQMAFQKlTDRAAMLDEI 244 99***********************65477777777777777777777777777766666666666666666666666643444445666666666 PP HHHHHH CS HLH 48 veYIks 53 ++Y+k MDP0000139206 245 MDYVKF 250 666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.316	144	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.5E-10	144	172	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-11	146	173	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.7E-4	149	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.2E-5	150	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.5E-10	228	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-11	231	261	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MANNPSEPQA DDFLEQILGL PNFASADANL AGSDGGLAGG QVSPASMMLQ LNSVDGSGHL 60 GGVGGGGGFH GGVFPLGLSL EQGKAGFLKH EEASGSGKRF RDDVVDSRVS SVKNVFHGQP 120 ISNTVAAAPH PPAMRPRVRA RRGQATDPHS IAERLRRERI AERIRALQEL VPSVNKKVLR 180 HILYLECCSE VHCMKKIWGL NHFTQNSTEL VSKSTQWVAC DFLSDNVQMA FQKLTDRAAM 240 LDEIMDYVKF LRLQVKVLSM SRLGGAGAVA PLVTDIPLSS VEEEGSEGGR NQPAWDKWSN 300 DGTERQVAKL MEDNVGAAMQ FLQXKALCIM PISLASAIYN TQPPDTSSVV KPEMNPPS

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MANNPSEPQA DDFLEQILGL PNFASADANL AGSDGGLAGG QVSPASMMLQ LNSVDGSGHL  60
GGVGGGGGFH GGVFPLGLSL EQGKAGFLKH EEASGSGKRF RDDVVDSRVS SVKNVFHGQP  120
ISNTVAAAPH PPAMRPRVRA RRGQATDPHS IAERLRRERI AERIRALQEL VPSVNKKVLR  180
HILYLECCSE VHCMKKIWGL NHFTQNSTEL VSKSTQWVAC DFLSDNVQMA FQKLTDRAAM  240
LDEIMDYVKF LRLQVKVLSM SRLGGAGAVA PLVTDIPLSS VEEEGSEGGR NQPAWDKWSN  300
DGTERQVAKL MEDNVGAAMQ FLQXKALCIM PISLASAIYN TQPPDTSSVV KPEMNPPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	153	158	RLRRER

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.15959	0.0	fruit\| leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Required for ovule fertilization. {ECO:0000269\|PubMed:15634699}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021898025.1	1e-149	transcription factor UNE12 isoform X2
Swissprot	O22768	3e-66	UNE12_ARATH; Transcription factor UNE12
TrEMBL	W9QXQ8	1e-148	W9QXQ8_9ROSA; Uncharacterized protein
STRING	XP_010087126.1	1e-148	(Morus notabilis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02590.3	1e-62	bHLH family protein

Link Out ? help Back to Top
Phytozome	MDP0000139206

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]