PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000138209

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

FAR1

Protein Properties

Length: 871aa MW: 98646.4 Da PI: 6.6496

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000138209	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	51.1	4.5e-16	62	134	2	88
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fY+eYA+++GFs ++ +s++sk +g+++ r+fvC +eg ++++ ++ C a+l++++++++kw+ tk+++eH+H+ MDP0000138209 62 FYDEYARRLGFSSKVGQSSRSKPDGTTIAREFVCGREGLKRRHADS--------------CGAMLRIELKRQDKWVSTKFVKEHSHA 134 9************************************9998777..............************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-12	62	134	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.8E-30	277	369	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.93	555	591	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.0E-10	561	589	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.8E-8	566	593	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 871 aa Download sequence Send to blast
MDVEVIDVEG MVHHGIVDDG DAERSDGGEV NNAENSEAXG EDGISEPYVG MEFTSEEAAK 60 TFYDEYARRL GFSSKVGQSS RSKPDGTTIA REFVCGREGL KRRHADSCGA MLRIELKRQD 120 KWVSTKFVKE HSHASASPGK MQYLRPRRHF AGAAKNAAET YQGVGIVPSG VMYVSMDGNH 180 GNRATVEKNR VVRNTSSAES NRPVKNAVTV NHALRPSSRR RTLGKDAQNL LEYFKKMQAE 240 NPGFFYAIQL DEDNHMANVF WADARSRTAY CHFGDFVTLD TTYRVNQYRV PFAPFTGVNH 300 HGQTVLFGCA LLLDESEASF IWLFKTFLTA MNDSPPVSIM TDQDRTIQIA VAQVFPEVRH 360 CISKWHVLRE GQDRLAHVCH AHPNFQLELY NCINLTETVE EFELSWDSIV DKYDLRRNDW 420 LQSLYNARAQ WVPVYFRDSF FAAISPNQGY DGSFFEGYVN QQTTLPLFFR QYERALDDWF 480 EREIEADFDT ICTTPVLRTP SPMEKQAANL YTRKIFAKFQ EELVETFVYT ANRIEGAGAI 540 STFRVAKFED DNKAYIVTFN YPEMRANCSC QMFEYSGILC RHVLTVFTVT NVLTLPSHYI 600 LKRWTRNAKN GTNPDERSGE LHGQESLTLR YNNLCRXAIK YAEDGATTTE TFIAAMTALK 660 EGGKKVSVVK NNVAKVAPPS GQISATGYDD KKNSTSTSDL TPSLWPRHDE VMRRFNLNDA 720 GAPAQNVSDL NLPRMAPVSL HRDDGTQENM VVLPCLKSMT WVMENKNSVP GNRVAVINLK 780 LQDYSRIPST ESEVKFQLSR VSLEPMLRSM SYISDQLSTP ANKVAVINLK ADRLMAMPLE 840 NHFSIPYYVL FEAPTHRGKE GVFLFWIDIX A

Sequence ? help Back to Top

Protein Sequence Length: 871 aa Download sequence Send to blast

MDVEVIDVEG MVHHGIVDDG DAERSDGGEV NNAENSEAXG EDGISEPYVG MEFTSEEAAK  60
TFYDEYARRL GFSSKVGQSS RSKPDGTTIA REFVCGREGL KRRHADSCGA MLRIELKRQD  120
KWVSTKFVKE HSHASASPGK MQYLRPRRHF AGAAKNAAET YQGVGIVPSG VMYVSMDGNH  180
GNRATVEKNR VVRNTSSAES NRPVKNAVTV NHALRPSSRR RTLGKDAQNL LEYFKKMQAE  240
NPGFFYAIQL DEDNHMANVF WADARSRTAY CHFGDFVTLD TTYRVNQYRV PFAPFTGVNH  300
HGQTVLFGCA LLLDESEASF IWLFKTFLTA MNDSPPVSIM TDQDRTIQIA VAQVFPEVRH  360
CISKWHVLRE GQDRLAHVCH AHPNFQLELY NCINLTETVE EFELSWDSIV DKYDLRRNDW  420
LQSLYNARAQ WVPVYFRDSF FAAISPNQGY DGSFFEGYVN QQTTLPLFFR QYERALDDWF  480
EREIEADFDT ICTTPVLRTP SPMEKQAANL YTRKIFAKFQ EELVETFVYT ANRIEGAGAI  540
STFRVAKFED DNKAYIVTFN YPEMRANCSC QMFEYSGILC RHVLTVFTVT NVLTLPSHYI  600
LKRWTRNAKN GTNPDERSGE LHGQESLTLR YNNLCRXAIK YAEDGATTTE TFIAAMTALK  660
EGGKKVSVVK NNVAKVAPPS GQISATGYDD KKNSTSTSDL TPSLWPRHDE VMRRFNLNDA  720
GAPAQNVSDL NLPRMAPVSL HRDDGTQENM VVLPCLKSMT WVMENKNSVP GNRVAVINLK  780
LQDYSRIPST ESEVKFQLSR VSLEPMLRSM SYISDQLSTP ANKVAVINLK ADRLMAMPLE  840
NHFSIPYYVL FEAPTHRGKE GVFLFWIDIX A

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.7826	2e-43	fruit\| leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008373411.2	0.0	protein FAR1-RELATED SEQUENCE 3-like
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A251P1K9	0.0	A0A251P1K9_PRUPE; Uncharacterized protein
STRING	XP_008373411.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Link Out ? help Back to Top
Phytozome	MDP0000138209

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]