PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000138102
Common NameBHLH18
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 240aa    MW: 27096.6 Da    PI: 7.6141
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000138102genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.5e-1370116354
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    ++h+e+E+rRR+riNs +++Lr llP +      K +Ka+ L k+v+ +k+L
  MDP0000138102  70 KNHKEAEKRRRERINSHLDKLRGLLPCN-----SKTDKASLLAKVVQRVKEL 116
                    58*************************8.....7************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.44767116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.39E-1170119No hitNo description
PfamPF000101.4E-1070116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-1471125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-1471125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-1273122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.9E-4155220No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MQPADHQGQE LYRFLAQNGL INVNNDHQLS AMQSFCSSSS NNYSYYPLEV SGVSTEHDAS  60
PQDRALAALK NHKEAEKRRR ERINSHLDKL RGLLPCNSKT DKASLLAKVV QRVKELKQQT  120
SEIAELETFP SETDEITVLS SNDYTSDGRI VFKASLCCED RSDLLPDLIE ILKSLHLRTI  180
KAEIATLGGR IRNVLIVAAD QDHTIESVHF LQNALKSLLE RSNSSERSKR RRVLDRTLVL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228232KRRRV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.166300.0cell culture| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894240.0KP689424.1 Prunus pseudocerasus isolate Unigene8039 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008387438.11e-176transcription factor bHLH106-like
SwissprotO806743e-88BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A498IB041e-175A0A498IB04_MALDO; Uncharacterized protein
STRINGXP_008387438.11e-175(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66723249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.12e-81bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]