PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000137531
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 677aa    MW: 74722.7 Da    PI: 9.1351
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000137531genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07579628147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
    MDP0000137531 579 RRPFSVTEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 628
                      678999********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.34E-6388478IPR029071Ubiquitin-related domain
CDDcd017696.16E-4397464No hitNo description
PROSITE profilePS5129416.23574633IPR017930Myb domain
SMARTSM007173.5E-7578631IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-10579629IPR009057Homeodomain-like
SuperFamilySSF466891.71E-15580661IPR009057Homeodomain-like
CDDcd116604.75E-17580630No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYQVPPTP KASRSARKRR VVRKVVEDNA LGAFDLLATV AGKLLLEGES  60
SPASNHTSIG KDQCAGSKEH CLDGDKPLKV EPCDQGSSDR IPLVSDHISQ GQNLSSRSKA  120
SPVHQNECHS VMTTSNCSER FVSDMLVSGK CKNEVVSFTG KLEAGYSGNR EPGDCKLDGA  180
VKILVNDETK SGEVLTGTGD GMCSLEDPVV WEGEPPPLAS SDSSTKVPMY VDRIPQRSFP  240
ASRDDVNVVS RDDDENSSGC THPSTAMKYS RPAPLRIGDR RIRKILASKY WKVAPKMKDE  300
THSNSYRDMK PNYHNRKNCY KRQRSQMNMP FKKRRLFDHS TVPNPDEGIS REGFFDLREK  360
GINASASCSK MQATGTSSSV AGQHSSFQSR NSHVKLRIKS FRIPELFIEI PETATVGSLK  420
KTVMEAVTAV LGGGLCVGVL LRGKKVRDDN KTLLQTGISQ DDHLDSVGFS LEANPSRNPP  480
PLCSDDSPCM LPCDELKPLI RYQPGPTSKP IPEPHMASFG GFIESDHDSA PSPTEMSAEK  540
STTDSKALVA VPDMGVDALA VVPGNRKSRR FDIGQRRIRR PFSVTEVEAL VQAVEKLGTG  600
RWRDVKLRAF DNAKHRTYVD LKDKWKTLVH TAKISPQQRR GEPVPQELLD RVLTAHAYWS  660
QQQAKQQLKQ PETCILV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A4e-565636691107Telomere binding protein TBP1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.69710.0bud| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008344838.10.0telomere repeat-binding protein 5-like isoform X2
TrEMBLA0A498KDB50.0A0A498KDB5_MALDO; Uncharacterized protein
STRINGXP_008344837.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13562844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-116TRF-like 2