PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000137325
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 513aa    MW: 57516.1 Da    PI: 6.9028
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000137325genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.41.9e-11323369455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h e+Er+RR+++N++f  Lr+++P+       K++ ++ L  Av YI++L+
  MDP0000137325 323 NHVEAERQRREKLNHRFYVLRSVVPNV-----SKMDRSSLLADAVAYINQLK 369
                    799***********************6.....5*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.0E-4021218IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.96E-17317385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.29E-14317373No hitNo description
PROSITE profilePS5088816.037319368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-9323368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-17323384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-15325374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MDEIISSCST NFCQETSPTF QQRLQFIVQN RPEWWVYSIF WQASKDSISD QVSLSWAGGH  60
FRNTRDHLAS KRSSRIANNY QLKFGFNNVE RKRVNNREVE SLLHDDMVDL DMRLVDHGDV  120
TDSEWFYFYT VSLTQSFSGS HGNNSTNILG RAFGSGGFVW LAGDHEFQFY ECERVKEARM  180
HGIQTLVCIA TPCGVLELAS LDVIKEDWGL VHLSKSLFGS DDNINMNNNN RLSKRQTSRD  240
GDVLVPILEN GLFSAAQKEL IPQDQGGGIN EAAPINLGGS SPESPSDSVG NFTSENTENT  300
IRSKKRGRSS KHGAANRESQ LLNHVEAERQ RREKLNHRFY VLRSVVPNVS KMDRSSLLAD  360
AVAYINQLKS KVQELEAKVQ EQPQKPKAGN NPSNNLDHHS SQSTSSIVDQ HHYSNKNNNS  420
INSSNSDRAA SAVMEVDVKI SASEAMIHVQ CPDEDYPYAK LMNALKSLGL QVYHASISSV  480
KELMIQDVVA RLPYGFIGGK EALRNGIIKG WYH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A8e-24192188192Transcription factor MYC3
4rqw_B8e-24192188192Transcription factor MYC3
4rs9_A8e-24192188192Transcription factor MYC3
4yz6_A8e-24192188192Transcription factor MYC3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.269350.0fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008342518.10.0transcription factor MYC2-like
TrEMBLA0A498I3740.0A0A498I374_MALDO; Uncharacterized protein
STRINGXP_008342518.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.15e-52bHLH family protein