PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000135594
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB
Protein Properties Length: 267aa    MW: 29880.7 Da    PI: 9.5753
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000135594genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.62.9e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd++l+d+++q+G g+W++ ++  g+ R++k+c++rw +yl
    MDP0000135594 14 KGAWSKEEDQRLIDYIRQHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding60.92.7e-1967111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T+eEdel+++++ +lG++ W++Ia++++ gRt++++k++w+++
    MDP0000135594  67 RGNFTQEEDELIIKLHSLLGNK-WSLIAARLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-24564IPR009057Homeodomain-like
PROSITE profilePS5129417.213961IPR017930Myb domain
SuperFamilySSF466897.91E-3013108IPR009057Homeodomain-like
SMARTSM007175.3E-141363IPR001005SANT/Myb domain
PfamPF002494.1E-161461IPR001005SANT/Myb domain
CDDcd001677.92E-111661No hitNo description
PROSITE profilePS5129428.85962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.1E-2965117IPR009057Homeodomain-like
SMARTSM007171.3E-1866114IPR001005SANT/Myb domain
PfamPF002491.3E-1767111IPR001005SANT/Myb domain
CDDcd001674.82E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MGRAPCCEKA HTNKGAWSKE EDQRLIDYIR QHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TQEEDELIIK LHSLLGNKWS LIAARLPGRT DNEIKNYWNT HVKRNLISRG  120
LDPQTHRPLN QATTATSTAP ASRLGLRNRP PPSSVLFDHK PVNNHSKIEL LKHPKMEQDY  180
YNYKIESEAN CSTATGSGTT TEEDQQQQQQ KYKCGDLNLD LSIGLEPFQS KPTRASSGNS  240
AESRLQQIIV PPNIVGGGSG GVFVLPG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-29141167108B-MYB
1h8a_C1e-281311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.258940.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, flower buds, and siliques. {ECO:0000269|PubMed:9839469}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN5447040.0JN544704.1 Malus x domestica MYB transcription factor 3 (MYB3) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008378762.20.0transcription repressor MYB6-like
SwissprotQ388514e-92MYB6_ARATH; Transcription repressor MYB6
TrEMBLA0A498JF170.0A0A498JF17_MALDO; Uncharacterized protein
STRINGXP_008378762.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.11e-86myb domain protein 6