PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000134824
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ARF
Protein Properties Length: 1134aa    MW: 124962 Da    PI: 6.8811
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000134824genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.31.8e-20136237199
                    EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                    f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++  +W++++i r++++r++lt+GW+ F + ++L +gD+v+F   +++++
  MDP0000134824 136 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDAVWTFRHIXRGQPKRHLLTTGWSLFISGKRLFAGDSVLFI--RDEKQ 228
                    99*****************************9445444.38************************************************..56888 PP

                    ..EEEEE-S CS
             B3  91 elvvkvfrk 99 
                    +l+++++r+
  MDP0000134824 229 QLLLGIRRA 237
                    89****997 PP
2Auxin_resp117.88.7e-39262345183
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                    aahaa+++s+F+v+YnPras+seFv++++k+ ka   +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+
  MDP0000134824 262 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAACgNQLSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 345
                    79****************************9887766*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-41124265IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.2E-39129251IPR015300DNA-binding pseudobarrel domain
CDDcd100171.72E-16135227No hitNo description
PfamPF023621.7E-18136237IPR003340B3 DNA binding domain
SMARTSM010197.5E-21136238IPR003340B3 DNA binding domain
PROSITE profilePS5086311.434136238IPR003340B3 DNA binding domain
PfamPF065074.9E-34262345IPR010525Auxin response factor
PROSITE profilePS5174526.35610211105IPR000270PB1 domain
SuperFamilySSF542771.08E-610341099No hitNo description
PfamPF023091.1E-510691106IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1134 aa     Download sequence    Send to blast
MKPPANGAGA SDASCASNSC QGXANVKSIN PELWQACAGP LVNLPPAGTH VVYFPQGHSE  60
QVAASIKKDV DGQIPNYPNL PSKLLCLLHN VTLHADPETD EVYAQMTLQP VSSFDKDALL  120
RSDLALKTNK PQPEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD  180
LHDAVWTFRH IXRGQPKRHL LTTGWSLFIS GKRLFAGDSV LFIRDEKQQL LLGIRRANRQ  240
PTNLSSSVLS SDSMHIGILA AAAHAAANNS PFTVFYNPRA SPSEFVIPLA KYYKAACGNQ  300
LSLGMRFRMM FETEESGTRR YMGTITGISD LDPVRWKNSQ WRNLQVNVMA TSRCISSLVT  360
SGHLVGHVGW DESTAGERRN RVSVWEIEPV TAPFFICPPP FFRSXRPRQP GMPDEDSDMD  420
SLFKRTMPWL GDEMSMKDPQ VLPGLSLVQW MNLQQNSSLG NSMQPNYLHS YSGSAMQNLN  480
GADLSQQLGL LAPQIPQMNN LQFNGQRLPQ QVQQLDQLPK LSSSTSPLAS MMQCQQQLGD  540
NSQQPRQNSV NQTLPSSQVQ SQLLQPPTLV HNNGGILQQQ SSSQNHLQRN LPQNLQQHQQ  600
QFAAQNQQQS FIQSQPPDQM NQQLQHLSDN QLQFQLFQKL QQQQQSLLAQ QALQQPGQLV  660
QLQDQQRQMF DVSQSFSRPS PTQMLDMPQM AQTSHPQSRT MPQQMTKNNN SQANSRFSHS  720
PQQPKLQQQQ PGXLPEMSGH MGHLPNPTTN QFSTAASNMM TGVAXAGXSG ITDEVPSCST  780
SPSTNNGPSV IQPLMNNKAH RNSSIGEDMA LSATAILSSG AINTMPWHGN LMKDFQHKSE  840
VKPSVNIARN QSXGILTPQA YMSGAAAHTD YLDTSSSTTS VGLSQNDVHL QQNNAPLPFH  900
PQSTLFRDAS QEVEVLADQR NDVLYGSNID VQLGIPLNPD PMLAKGVVGL AKDFSNNISS  960
GGILGNYENS KGAQPELSSS MVSQSFGVPD MTFNSIDSAI NDSXFLDSGP WAPAPPLQRM  1020
RTYTKVYKRG AVGRSIDMTR YTNYDELKQD LARRFGIEGQ LEDRGRVGWK LVYVDHEKDV  1080
LLVGDDPWEE FVNCVRCIKI LSPQEVQQMS LDGDFGGNAV LPNQACSSSD GGKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1632938851388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.117321e-113fruit| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008341148.20.0auxin response factor 19-like
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A498HPB90.0A0A498HPB9_MALDO; Auxin response factor
STRINGXP_008341148.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68233044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19