PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000134211
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 88aa    MW: 10453.2 Da    PI: 10.1516
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000134211genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.31.2e-101449843
                   HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
         SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    r++ f kR+  +lKK  EL +LC++++ vi  +++
  MDP0000134211 14 DRTIMFQKRKRRLLKKVRELTTLCGVNAVVIFRGPH 49
                   58999**************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-8158IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.269144IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-14174IPR002100Transcription factor, MADS-box
PfamPF003192.8E-121256IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MFRQKVKVAW VENDRTIMFQ KRKRRLLKKV RELTTLCGVN AVVIFRGPHD NKPTVWHSGQ  60
VTEELLTSVQ KMEEITDLEE EKTKLEEK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028957937.13e-58agamous-like MADS-box protein AGL80
TrEMBLA0A498JY542e-42A0A498JY54_MALDO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2276223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.16e-07AGAMOUS-like 48