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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000133542 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MYB | ||||||||
Protein Properties | Length: 363aa MW: 40679.2 Da PI: 5.0738 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.8 | 3.4e-15 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++ Ed++l+ +++ G ++W++ +++ g+ R++k+c++rw +yl MDP0000133542 17 RGPWSPAEDLRLITFIQKNGHDNWRALPKRAGLLRCGKSCRLRWINYL 64 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 50.3 | 5.4e-16 | 70 | 115 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE+e ++++++ lG++ W++Ia++++ gRt++++k+ w+++l MDP0000133542 70 RGNFTIEEEESIIRLHEALGNK-WSKIAAHFP-GRTDNEIKNVWNTHL 115 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-22 | 8 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.859 | 12 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.11E-29 | 15 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-12 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-14 | 17 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.94E-9 | 19 | 64 | No hit | No description |
PROSITE profile | PS51294 | 24.844 | 65 | 119 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-26 | 68 | 120 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-13 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 70 | 115 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.24E-9 | 72 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009809 | Biological Process | lignin biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MGGKGRSPCC DKEKVKRGPW SPAEDLRLIT FIQKNGHDNW RALPKRAGLL RCGKSCRLRW 60 INYLRPDVKR GNFTIEEEES IIRLHEALGN KWSKIAAHFP GRTDNEIKNV WNTHLKKRLK 120 RQNLPSSSSS SSSTTTTLLS GGKPSVGGGE ELIEHQSAEE TSMATXNKPH EPCSLTIQEN 180 PNHHDSPMEL TNDPKELTGL TTSSSNXSSN ESNGSSSSSQ VVGMSRPGAE EQQMDDSNYF 240 SGIFDFPFES DSYFWDMFND FEPLQSNLVQ VLHXADEANC QRSGLGQVEN GKWLSYLESE 300 LGLEVTPTES EKNNQEILPK YATEQPIFPE AFDKLPNPTE ADESMDYFNS NVAFATQQFL 360 HSN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 9e-25 | 17 | 119 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 9e-25 | 17 | 119 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 140 | 148 | GGKPSVGGG |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00144 | DAP | Transfer from AT1G16490 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008372170.2 | 0.0 | transcription factor MYB58-like | ||||
TrEMBL | A0A498JUC5 | 0.0 | A0A498JUC5_MALDO; Uncharacterized protein | ||||
STRING | XP_008372170.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10029 | 30 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16490.1 | 6e-71 | myb domain protein 58 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000133542 |