PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000132832
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 454aa    MW: 49535.1 Da    PI: 6.7461
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000132832genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.85e-13212256347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ Iar   ++Rt+ q+ s+ qky
    MDP0000132832 212 PWTEEEHRMFLIGLQKLGKGDWRGIARSYVTTRTPTQVASHAQKY 256
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.481205261IPR017930Myb domain
SMARTSM007179.1E-9209259IPR001005SANT/Myb domain
SuperFamilySSF466895.83E-16211262IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-10211255IPR009057Homeodomain-like
TIGRFAMsTIGR015575.3E-17212260IPR006447Myb domain, plants
PfamPF002491.5E-10212256IPR001005SANT/Myb domain
CDDcd001678.75E-9212257No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MTRRCSHCSN NGHNSRTCPT RVGSSSSSPS LCGGGGVKLF GVRLTDGSII KKSASMGNLS  60
CAVAHYHSSS PNPDSPSSDP LHDPVHVPDG YLSDDPAHAS SSVNRRGDRK KEFVFVFVFV  120
MLSSLEFGGP STTGAHACTF TILLEFGGPS ILGFWIIHKF CQRLRYSASN NALTTVNILL  180
ESSNSCLPPI IVEIFGLEWN LDEVMFMVLG TPWTEEEHRM FLIGLQKLGK GDWRGIARSY  240
VTTRTPTQVA SHAQKYFIRQ SNATRRKRRS SLFDMVPDMA MDPPPVPEEQ VFLPSSREGE  300
SEDANSLPSL NLSLSSETKP METTHEEKVI ELDQEPAMGS NGFPPMAPPY IPAYTSYPWP  360
YWAPSAGPFR EMVGEPSHQP VLRPIPIVPK EPVNVDALGM SQLSLGETER GLKEPSPLSL  420
KLLGEPSRQS AFHPNAPASE PDVSKGKSSA IQAV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.122940.0fruit| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in all tissues, with the highest level in senescent leaves. {ECO:0000269|PubMed:12172034}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0744750.0DQ074475.1 Malus x domestica MYBR2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028952988.11e-165transcription factor MYBS3-like
SwissprotQ7XC577e-58MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLA0A498HAH90.0A0A498HAH9_MALDO; Uncharacterized protein
STRINGXP_008380859.11e-151(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77193346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.12e-45MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]