PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

SBP

Protein Properties

Length: 177aa MW: 19700.4 Da PI: 8.9175

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000132774	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	87.8	1.3e-27	19	95	9	78
---TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS.......EEETTT--SS--S-STTTT-------S--- CS SBP 9 adlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr.......fhelsefDeekrsCrrrLakhnerrrkkqa 78 +dls+ak+yhrrhkvC+vhska+++lv +++q fCqqCsr h+l+e De+krsC + La+hn+rrrk ++ MDP0000132774 19 TDLSNAKDYHRRHKVCDVHSKATKALVGNVMQLFCQQCSRgltlmdrXHALRELDEGKRSCCTGLAGHNRRRRKMHP 95 69**********************************9644444448************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	20.23	9	93	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.66E-25	19	98	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	1.8E-19	19	79	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.4E-16	20	92	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MQQSSSIPNA ILFALVFFTD LSNAKDYHRR HKVCDVHSKA TKALVGNVMQ LFCQQCSRGL 60 TLMDRXHALR ELDEGKRSCC TGLAGHNRRR RKMHPDSAVN GGSLNNESGS SFAMNVKLKS 120 GILFICSFAN CELRSVVIVD RSLMGSDYTN HTLSSRSVTE AHIEDVLWLG LTYVLMS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-19	19	92	18	84	squamosa promoter binding protein-like 4
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed during plant development. {ECO:0000269\|PubMed:10524240}.

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269\|PubMed:16554053}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009353416.1	4e-41	PREDICTED: squamosa promoter-binding-like protein 1
Swissprot	Q9S7P5	6e-31	SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBL	A0A498JA25	3e-77	A0A498JA25_MALDO; Uncharacterized protein
STRING	XP_008378618.1	6e-67	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76580.1	5e-30	SBP family protein

Link Out ? help Back to Top
Phytozome	MDP0000132774

Publications ? help Back to Top
Jung S, et al. Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes. BMC Genomics, 2006. 7: p. 81 [PMID:16615871] Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]