PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000130036
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Trihelix
Protein Properties Length: 323aa    MW: 36710.6 Da    PI: 7.7844
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000130036genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix31.64.4e-1037107879
       trihelix   8 laLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 
                    l L++ +  +e +  ++ +  ++W+ +++++ + g++r+  q + kwe l ++yk ik++e k ++ +s  +
  MDP0000130036  37 LILVNEVAAVEGDCLKALSSFQKWKIIAQNCFALGVSRTLDQYRRKWEALFGEYKGIKQWEAKSRASDS-YW 107
                    5666666677777777788889****************************************9754444.55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MKPEQTPSXL DRSHRSSGNR RSTRSQAAPD WNPTDELILV NEVAAVEGDC LKALSSFQKW  60
KIIAQNCFAL GVSRTLDQYR RKWEALFGEY KGIKQWEAKS RASDSYWVLG IERRKRNGLP  120
ENFDQELFRG IEKLVRVRGN QSDTDPDSDP EDEAEEEPDV DSEPESKRRR RRSTSKKSSP  180
RENSIRSCKR EKPQETHAEE KPQKTXAEEK PVGSGLKAIP PKSLAEEHPQ KSCVKKKLTN  240
SQRKEEAISI EEQEKIAAMK LHESADLIRA IVTETPDHKA AGVKSTGDLQ TDFVRCQGDR  300
VIACLGDIVK TLDQLRHLVQ ECE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166171KRRRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.153190.0bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008393924.20.0trihelix transcription factor ASR3
TrEMBLA0A498HQN90.0A0A498HQN9_MALDO; Uncharacterized protein
STRINGXP_008393924.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67322633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.12e-49sequence-specific DNA binding transcription factors