PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000129787

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bHLH

Protein Properties

Length: 391aa MW: 43905.3 Da PI: 4.7441

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000129787	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.3	0.00032	229	251	8	30
HHHHHHHHHHHHHHHHHCTSCCC CS HLH 8 rErrRRdriNsafeeLrellPka 30 E +RR ri ++++ L+ellP++ MDP0000129787 229 SEYNRRMRIGERLSALQELLPEP 251 6889******************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.023	221	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.62E-6	225	284	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-4	229	275	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MIWVGIGSNA VLRSCLVKIE DPLHRVGMEG QSSLTNTIQM LSMGFCGNAA DDISEALGYN 60 LNQQVMMEAG RTADQTDVLS LPWWIQPEKP SHNYVEYLAE SSAFVPKSPC EDMWESIPSS 120 VVSIHDVGRV SEFQRDGLYS GLXNACGSKS TDFSRDMDSS KMKLLSLHND ELVNTQHQLP 180 MQYHTSRTDN PNWDSYDSVS QVDPRATIDT PGSLCQPHHI VSKQRTFSSE YNRRMRIGER 240 LSALQELLPE PAEGRQVCVL DDVIDQIKFL KLQIKVNLSL YAATPQDLSR SRLGGEPIAE 300 PIIFREVNSS ILRSGLRQNH PSFTLCKGDS YDRSFYVSQG YGHYFCHQQM LNEPLEEMIG 360 NLLEVDVLAA SELLEKKGLL LLPMEYSEDS A

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MIWVGIGSNA VLRSCLVKIE DPLHRVGMEG QSSLTNTIQM LSMGFCGNAA DDISEALGYN  60
LNQQVMMEAG RTADQTDVLS LPWWIQPEKP SHNYVEYLAE SSAFVPKSPC EDMWESIPSS  120
VVSIHDVGRV SEFQRDGLYS GLXNACGSKS TDFSRDMDSS KMKLLSLHND ELVNTQHQLP  180
MQYHTSRTDN PNWDSYDSVS QVDPRATIDT PGSLCQPHHI VSKQRTFSSE YNRRMRIGER  240
LSALQELLPE PAEGRQVCVL DDVIDQIKFL KLQIKVNLSL YAATPQDLSR SRLGGEPIAE  300
PIIFREVNSS ILRSGLRQNH PSFTLCKGDS YDRSFYVSQG YGHYFCHQQM LNEPLEEMIG  360
NLLEVDVLAA SELLEKKGLL LLPMEYSEDS A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008355451.2	0.0	transcription factor bHLH7
TrEMBL	A0A498KB28	0.0	A0A498KB28_MALDO; Uncharacterized protein
STRING	XP_008355451.1	0.0	(Malus domestica)
STRING	XP_008368858.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12164	24	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	5e-11	LJRHL1-like 1

Link Out ? help Back to Top
Phytozome	MDP0000129787