PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000129298
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 225aa    MW: 26242.3 Da    PI: 8.9514
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000129298genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.81.6e-141251342
                   --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
         SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                   i n+  r++++ kR+ng +KK +E+ +LCd+ v+ i++s+
  MDP0000129298 12 IMNDASRKTSYNKRKNGFIKKMHEINILCDVPVCGIMYSP 51
                   8899**********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.2E-18261IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.848250IPR002100Transcription factor, MADS-box
CDDcd002661.01E-25385No hitNo description
SuperFamilySSF554552.49E-20396IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-7424IPR002100Transcription factor, MADS-box
PfamPF003191.5E-131252IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-72439IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MAGRKKVKLA YIMNDASRKT SYNKRKNGFI KKMHEINILC DVPVCGIMYS PYESXPVVWP  60
NLLETQRLIT KFRSMPEAER NKKMVTHEMF LKQRIEKEQE KLNKLKKENR EKQIRMLMNQ  120
CLTGRPLIGL DLNDLNDMEC MIKECVTEIV AQIKSRKEEN LAERNQPQVA RTQVLAPSTD  180
QNMHAAMETQ MFDLNNMDAM QTAPWFVGDV SNQHFGYVDD QIPPL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008355789.21e-169agamous-like MADS-box protein AGL80
TrEMBLA0A498K7081e-166A0A498K708_MALDO; Uncharacterized protein
STRINGXP_008355789.11e-168(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-34AGAMOUS-like 80