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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000129203 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | bZIP | ||||||||
Protein Properties | Length: 361aa MW: 40193 Da PI: 6.5186 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32.4 | 2e-10 | 160 | 218 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l + + l se+ MDP0000129203 160 KRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTSGLSSEN 218 9*****************************************99988877777776665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.3E-16 | 156 | 220 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.783 | 158 | 221 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.2E-10 | 160 | 211 | No hit | No description |
Pfam | PF00170 | 1.9E-8 | 160 | 218 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 5.2E-9 | 160 | 215 | No hit | No description |
CDD | cd14703 | 4.85E-24 | 161 | 210 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MQDPXNPKPD PSSSSQDSQR PRMAPPFQDA TPSLPFRGSY HRRAQSEVHF RIPDDLDLLQ 60 DPFDGPSGRF EELGGSEEDI FGTYMDMEKL GSKLDDGPSD LKPENAGGSL QSEGGGFGGD 120 MSARPRHRHS NSVDASLDSI EAKKAMAPDK LAELWTVDPK RAKRILANRQ SAARSKERKA 180 RYISELERKV QTLQTEATTL SAQLTLFQRD TSGLSSENTE LKLRVQAMEQ QAQLRDALND 240 ALKKELERLK VATGEQLTHT DSYNLGMHHF PYSQSPFFPS QSQTGSRDSQ NIHMPQFHQF 300 QPNMSAPHQP MLGSSXSHAC LDMSQQDPIG RFQGLDINNR GSHLVRPEGP SISAGESNRR 360 F |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Strongly expressed in mature pollen. {ECO:0000269|PubMed:27896439}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00303 | DAP | Transfer from AT2G40620 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ445899 | 1e-79 | HQ445899.1 Malus x domestica cultivar Evereste fire blight resistance locus LG12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008359822.2 | 0.0 | transcription factor RF2b-like | ||||
Swissprot | O22873 | 1e-111 | BZP18_ARATH; bZIP transcription factor 18 | ||||
TrEMBL | A0A498KSN4 | 0.0 | A0A498KSN4_MALDO; Uncharacterized protein | ||||
STRING | XP_008359822.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1548 | 34 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40620.1 | 3e-99 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000129203 |
Publications ? help Back to Top | |||
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