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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000128924 | ||||||||
Common Name | AP2D36 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | RAV | ||||||||
Protein Properties | Length: 406aa MW: 43943.1 Da PI: 9.2165 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 42 | 2.3e-13 | 76 | 124 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAa+a++ a+++++g MDP0000128924 76 SRYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDVAAQRFRG 124 78****9888.8*********3.....5**********99*************98 PP | |||||||
2 | B3 | 93.9 | 1.2e-29 | 213 | 322 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k+ tpsdv+k++rlv+pk++ae+h + +++ l +ed g++W+++++y+++s++yvltkGW++Fvk+++L +gD+v F MDP0000128924 213 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqsgsaatltvsASTACKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLMAGDIVSF 308 89*************************999876666666533344999************************************************ PP EE-SSSEE..EEEE CS B3 83 kldgrsefelvvkv 96 +++ +++l++ + MDP0000128924 309 QRSTGPDKQLYIDW 322 *8766777677665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.83E-17 | 76 | 133 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.45E-26 | 76 | 134 | No hit | No description |
Pfam | PF00847 | 5.2E-9 | 76 | 124 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-20 | 77 | 132 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.481 | 77 | 132 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-29 | 77 | 138 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 3.0E-39 | 206 | 326 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.44E-28 | 211 | 322 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.44E-28 | 212 | 311 | No hit | No description |
Pfam | PF02362 | 5.1E-27 | 213 | 322 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.8E-23 | 213 | 326 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.788 | 213 | 325 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MDGISSTEES TSSDSISISP LQHIVARVDP FAKSAPQVAS LCRVGSGASS VILDPELSSS 60 GGTGGVEAES RKLPSSRYKG VVPQPNGRWG AQIYEKHQRV WLGTFNEEDE AARAYDVAAQ 120 RFRGRDAVTN FKPSSAEPIS SDDEENDDAE AAFLSSHSKS EIVDMLRKHT YNDELEQSKR 180 NNSAYGKRSR SNGSLGLFGT DNSGVPKARE QLFEKAVTPS DVGKLNRLVI PKQHAEKHFP 240 LQSGSAATLT VSASTACKGV LLNFEDVGGK VWRFRYSYWN SSQSYVLTKG WSRFVKEKNL 300 MAGDIVSFQR STGPDKQLYI DWKARMSVNN TNNNGSSPVQ VGPVPMVRLF GVNIFKIPGS 360 SGPGSADAAA AAAIGGGCNN NIGKRMREME LLELEFGKKP RIIGAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-57 | 210 | 325 | 11 | 117 | DNA-binding protein RAV1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.13658 | 0.0 | bud| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:18718758}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00024 | PBM | Transfer from AT1G25560 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU732460 | 0.0 | GU732460.1 Malus x domestica AP2 domain class transcription factor (AP2D36) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001315729.1 | 0.0 | AP2/ERF and B3 domain-containing transcription factor RAV1-like | ||||
Swissprot | Q9C6M5 | 1e-140 | RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1 | ||||
TrEMBL | A0A498ICN6 | 0.0 | A0A498ICN6_MALDO; Uncharacterized protein | ||||
STRING | XP_008350869.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2920 | 32 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 1e-131 | related to ABI3/VP1 1 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000128924 |