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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000128214 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | TALE | ||||||||
Protein Properties | Length: 703aa MW: 77208.1 Da PI: 7.723 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.2 | 1.5e-09 | 399 | 436 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + MDP0000128214 399 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 436 554459******************************88 PP | |||||||
2 | BELL | 121.4 | 3.8e-39 | 263 | 334 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kk kL+++l+eVd+rY+qy+ q+q+vissFe++ag+gsa+ Yt+lAl++iS++FrcLkdai++qi MDP0000128214 263 ERQEIQMKKGKLINMLDEVDQRYRQYHRQMQMVISSFEQAAGIGSARTYTALALQTISKQFRCLKDAITNQI 334 79*********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 5.5E-64 | 192 | 332 | IPR006563 | POX domain |
Pfam | PF07526 | 1.0E-49 | 197 | 331 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.195 | 377 | 440 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.3E-9 | 380 | 444 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.69E-12 | 380 | 441 | No hit | No description |
SuperFamily | SSF46689 | 7.27E-17 | 381 | 447 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.0E-29 | 383 | 447 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.9E-18 | 397 | 436 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 703 aa Download sequence Send to blast |
MATYFHHHRG NSSEIQASSD SALQTLVLMN PSYVPYSDTP PPPQQQQQPQ TPPAATNLVF 60 LNSAANSLTH HPSTLSHAPP SHHQQFVGIP LAQDPNSNSS QSMHHPHHDI STLHAFMPRI 120 QTQYALWNSI DPTAAARDTP RAQQGLSLSL SSQQXGWSFQ GGATEREVPS GEDIRVSSGS 180 NSSASGVTNG VSGMQSVLLS SKYLKAAQEL LDEVVNVGNG MRTELPKKGN GQQSKAAAES 240 AAGDXSVGGE GSGKRASELS TAERQEIQMK KGKLINMLDE VDQRYRQYHR QMQMVISSFE 300 QAAGIGSART YTALALQTIS KQFRCLKDAI TNQIRSANKS LGEEDSVGGK IEGSRLKYVD 360 HQLRQQRALQ QLGMIQHNAW RPQRGLPERS VSVLRAWLFE HFLHPYPKDS DKHMLAKQTG 420 LTRSQVSNWF INARVRLWKP MVEEMYMEEV KEQEQNGSSE KMSKSNGDSA SKSTAPQDTE 480 NQTTSTFNFK QENSVNHNLA AHPSISISQA STSPTNMVRN QSGFTLIGSS ELDGITQGSP 540 KKPRSTEIMH SSNGSVPRMN IEAQEVNNEQ VSMKFGDERQ GRDGYSFMGG QTNFIGNFGQ 600 YPIGEIGRFD ADQFAPRFSG NGVSLTLGLP HCENLSMSGA HRHQTFLPNQ NIQLGRRVDT 660 GETNDQFGAI NTSASHSSAA AFENIDIQNR KRFVAQLLPD FVA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 5e-16 | 386 | 444 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 5e-16 | 386 | 444 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.8046 | 0.0 | bud| fruit| leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008387112.2 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_008387113.2 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_008387114.2 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Swissprot | Q9SJ56 | 0.0 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | A0A498IEG7 | 0.0 | A0A498IEG7_MALDO; Uncharacterized protein | ||||
STRING | XP_008387112.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1627 | 34 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 1e-155 | BEL1-like homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000128214 |
Publications ? help Back to Top | |||
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