PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

MDP0000128008

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

DBB

Protein Properties

Length: 202aa MW: 22767.1 Da PI: 6.2297

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000128008	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.2	7.1e-08	4	33	5	34
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ ++lfC ++ lC++C ++ H MDP0000128008 4 LCDVCESAAAILFCAADEAALCRSCDEKVH 33 7**************************998 PP
2	zf-B_box	26.4	1.5e-08	53	91	3	37
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 ++C+ +e+ ++ ++Ce +++ lC +C + H g H MDP0000128008 53 IPCCDICENAPAFFYCEVDGSSLCLQCDMIVHVGgkrtH 91 689**************************9995544455 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	8.9E-8	1	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.139	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	1.05E-5	3	33	No hit	No description
Pfam	PF00643	3.7E-6	3	42	IPR000315	B-box-type zinc finger
SMART	SM00336	5.8E-8	51	96	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	8.759	51	96	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.4E-6	53	85	IPR000315	B-box-type zinc finger
CDD	cd00021	3.28E-6	56	84	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MRTLCDVCES AAAILFCAAD EAALCRSCDE KVHLCNRLAN RHVRVGLATP SDIPCCDICE 60 NAPAFFYCEV DGSSLCLQCD MIVHVGGKRT HGRYLLFRQR VEFPGNKLGR SEELGLQPLD 120 QKKVRRDENQ LPDVKPKENE HNHNISPTAV LENNIDGDYK IDNTLIDLNT RPQRIRRQAS 180 KPGILCLLNV QIIDMQFESC EL

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269\|PubMed:18540109}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028954450.1	1e-134	B-box zinc finger protein 19-like
Swissprot	C0SVM5	3e-71	BBX19_ARATH; B-box zinc finger protein 19
TrEMBL	A0A498JUK3	1e-131	A0A498JUK3_MALDO; Uncharacterized protein
STRING	XP_009345267.1	1e-122	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2734	33	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38960.1	1e-73	DBB family protein

Link Out ? help Back to Top
Phytozome	MDP0000128008