PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000126615

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

C2H2

Protein Properties

Length: 712aa MW: 77111.9 Da PI: 9.2048

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000126615	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.8e-05	182	204	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H MDP0000126615 182 FICEVCNKGFQREQNLQLHRRGH 204 89*******************88 PP
2	zf-C2H2	12.8	0.00035	258	280	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ MDP0000126615 258 WKCEKCSKRYAVQSDWKAHSKTC 280 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.19E-7	181	204	No hit	No description
Gene3D	G3DSA:3.30.160.60	8.2E-6	181	204	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.99	182	204	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0052	182	204	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	3.6E-5	182	204	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	184	204	IPR007087	Zinc finger, C2H2
SMART	SM00355	130	223	253	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.7E-5	246	279	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.19E-7	253	278	No hit	No description
SMART	SM00355	130	258	278	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 712 aa Download sequence Send to blast
MHARCQEENQ LHVTETGPSR RCSLHVSDQR PRERERELSN DNISLLAYAG FQQHSPVSNY 60 LHQRTSQIAQ GGLLKGQKEK KKKKIDQKEM AASSSSGAPL FGIREEDQNQ QMNKQQHSST 120 TPTSSTAAPA APTQKKKRNQ PGTPSKYEFS NLLWFGIFHE RTDPEAEVIA LSPKTLMATN 180 RFICEVCNKG FQREQNLQLH RRGHNLPWKL KQKTTKEPKR KVYLCPEPTC VHHDPSRALG 240 DLTGIKKHYS RKHGEKKWKC EKCSKRYAVQ SDWKAHSKTC GTREYRCDCG TLFSRRDSFI 300 THRAFCDALA QESARHPPSL STIGSSLYGG GSLSNTGLGL SQQVVGPPHQ LSSLDHNNQS 360 SLLRLGGSSG ADAAARTGQF DHLLSSPSMG SSFRSAQSSA ASFFMTGASD HDQSNQQQYH 420 DQDKSFHGLM QFQSPHQHHS GGGANIFNLP FLSNSTTNNT NSYSANNNNN LLISPDHFNT 480 NANGSTTGGG SDVSNNLFTG HIMGGGDHMS SGVPSLYSNN GNSQQQAMSS HMSATALLQK 540 AAQMGSTTSN NTTTASLLRS FGSSSSTTTK PDRLGTLVPS SLGGMFGSDQ TDQSHLQDLM 600 NSFASGGGGS SIFGNTAFGG YDASENRAIN MEDTKLQQQN LGLSNIGGGS DRLTRDFLGV 660 GQVVRSMSGG FSHQRSEQQH GGMEMMSSLD SESNAAAAAP STQSFGGGGN FQ

Sequence ? help Back to Top

Protein Sequence Length: 712 aa Download sequence Send to blast

MHARCQEENQ LHVTETGPSR RCSLHVSDQR PRERERELSN DNISLLAYAG FQQHSPVSNY  60
LHQRTSQIAQ GGLLKGQKEK KKKKIDQKEM AASSSSGAPL FGIREEDQNQ QMNKQQHSST  120
TPTSSTAAPA APTQKKKRNQ PGTPSKYEFS NLLWFGIFHE RTDPEAEVIA LSPKTLMATN  180
RFICEVCNKG FQREQNLQLH RRGHNLPWKL KQKTTKEPKR KVYLCPEPTC VHHDPSRALG  240
DLTGIKKHYS RKHGEKKWKC EKCSKRYAVQ SDWKAHSKTC GTREYRCDCG TLFSRRDSFI  300
THRAFCDALA QESARHPPSL STIGSSLYGG GSLSNTGLGL SQQVVGPPHQ LSSLDHNNQS  360
SLLRLGGSSG ADAAARTGQF DHLLSSPSMG SSFRSAQSSA ASFFMTGASD HDQSNQQQYH  420
DQDKSFHGLM QFQSPHQHHS GGGANIFNLP FLSNSTTNNT NSYSANNNNN LLISPDHFNT  480
NANGSTTGGG SDVSNNLFTG HIMGGGDHMS SGVPSLYSNN GNSQQQAMSS HMSATALLQK  540
AAQMGSTTSN NTTTASLLRS FGSSSSTTTK PDRLGTLVPS SLGGMFGSDQ TDQSHLQDLM  600
NSFASGGGGS SIFGNTAFGG YDASENRAIN MEDTKLQQQN LGLSNIGGGS DRLTRDFLGV  660
GQVVRSMSGG FSHQRSEQQH GGMEMMSSLD SESNAAAAAP STQSFGGGGN FQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	5e-35	254	315	3	64	Zinc finger protein JACKDAW
5b3h_F	5e-35	254	315	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.25156	2e-40	leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in leaf tissues. {ECO:0000305\|PubMed:22898356}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:22898356, ECO:0000269\|PubMed:24821766}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009351632.1	0.0	PREDICTED: protein indeterminate-domain 5, chloroplastic
Refseq	XP_009351633.1	0.0	PREDICTED: protein indeterminate-domain 5, chloroplastic
Swissprot	Q9ZUL3	1e-137	IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBL	A0A498HJB5	0.0	A0A498HJB5_MALDO; Uncharacterized protein
STRING	XP_009351632.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1536	33	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-109	indeterminate(ID)-domain 5

Link Out ? help Back to Top
Phytozome	MDP0000126615

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]