PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000125317
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family AP2
Protein Properties Length: 818aa    MW: 90013.2 Da    PI: 6.7029
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000125317genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.84e-11345401155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  MDP0000125317 345 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 401
                    57*******************4444.2455535555.779999**************98 PP
2AP246.49.7e-15444495155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  MDP0000125317 444 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 495
                    57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.77E-19345411No hitNo description
SuperFamilySSF541711.18E-14345411IPR016177DNA-binding domain
PfamPF008471.4E-8345401IPR001471AP2/ERF domain
SMARTSM003801.1E-22346415IPR001471AP2/ERF domain
PROSITE profilePS5103217.319346409IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-11346410IPR001471AP2/ERF domain
PRINTSPR003676.1E-6347358IPR001471AP2/ERF domain
CDDcd000188.82E-25444503No hitNo description
PfamPF008471.2E-9444495IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-17444504IPR016177DNA-binding domain
SMARTSM003802.4E-33445509IPR001471AP2/ERF domain
PROSITE profilePS5103219.045445503IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-18445503IPR001471AP2/ERF domain
PRINTSPR003676.1E-6485505IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 818 aa     Download sequence    Send to blast
MGSMNWLGFS LSPQEVVPAD PTISEGTDHR HQQHGQDHQD LSDQTLVSRL RSKYSDEISG  60
TDASGDCFDL TNSHDDSSAT PTAPNHHSLN HLPTSFGMLH QAAFDSQGAD WNMNSPDSTN  120
YKFTSDHLSM LNSCNTLNLE NHQNRHQQQP KLENFLGRHS FIADHPDHIQ SSTSSAHAYN  180
SKNTASINTT DNIFTRTVSS LQLPLEISDP TNVINGDGAV GNININSSTS NIGLSMIKTW  240
LRNQPASQLQ EMNKNDVNGI GVSNTSTSTS SAQTLSLSMS TAGATTAGDQ TCSSDRDRDS  300
NKQAIIRTAA PAATIQSGID NQTSIATAIE AVPRKSIDTF GQRTSIYRGV TRHRWTGRYE  360
AHLWDNSCRR EGQTRKGRQG GYDKEEKAAR AYDLAALKYW GTTTTTNFPI SNYEKEVDEM  420
KHMTRQEYVA SLRRKSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE  480
EAAEAYDIAA IKFRGLNAVT NFDMTRYDVK SILESSTLPI GGAAKRLKDV EQAHHQHLHE  540
MTLLADGHNR STMDDQREKL MMMNTSSNSL DQYHQQLING DHHGMRINNV YGTGAGWPTL  600
AFNQAATAVA HQAAVPPFGM HYYSSVPYNS NGGQRVWCKQ EQDTNSQSFY QPQDHHRQDL  660
HHHQLLQLGS THNFFQPVNL MGNSTTDSME HSSGSNSVIY NGTTAGDHGG YIIPMGTAIA  720
NDHENNSNAF GNGSSDHDQV KPALGYENAF GSSSTTTTVD AYNHAKSLYY LPVQAPQSSS  780
VSSIGVSTKG SSEYDNWVPT AVPTSTHNMA PFTVWNDT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4296731e-180KC429673.1 Rosa canina BBM1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008355861.10.0AP2-like ethylene-responsive transcription factor BBM1 isoform X2
TrEMBLA0A498K9U50.0A0A498K9U5_MALDO; Uncharacterized protein
STRINGXP_008355860.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81862840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-124AP2 family protein