PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000124672
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 366aa    MW: 40782.4 Da    PI: 6.4285
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000124672genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH382.9e-12186232455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h  +Er+RR+++ ++f  L  llP +     kK +Ka++L  A++Y+k+Lq
  MDP0000124672 186 DHVLAERKRRENLSQRFIALSALLPGL-----KKTDKASVLGDAIKYVKHLQ 232
                    58899**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.04182231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-15186243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.36E-12187236No hitNo description
PfamPF000107.1E-10187232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-16187246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-14188237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MDMISSAKWV SDFEIEDPXF INQYEMSSRD YSLDELNFLS FSSESYSSYP NFTPKADNFS  60
KASIENLHQM YGTHERPAKQ PKNNTNSWNS CSTDHIITAN ASSSSSSHLI SFESSNSSPP  120
TTSQQYYGLD CRVIXPKNEV EYSNGKLNPR ALISQGIYDP QTCSPKHGQG IKRAATVTKS  180
PLDAQDHVLA ERKRRENLSQ RFIALSALLP GLKKTDKASV LGDAIKYVKH LQELTKMLEK  240
QAAKKTVEAV VFVKRTQYSA DDDISSSDEN SESCSNQPLP EIEARVSDKE VLIRIHSEKT  300
KGSLASILSE IEKLDLTIVH SCALPLGNST LDITVVAQMD VEFRMTVKDL VKNLRQALLK  360
LVGPEI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190195ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017189950.20.0transcription factor bHLH18-like
RefseqXP_017189951.20.0transcription factor bHLH18-like
TrEMBLA0A498HVP70.0A0A498HVP7_MALDO; Uncharacterized protein
STRINGXP_008380062.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-53bHLH family protein