PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000124536 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | bHLH | ||||||||
Protein Properties | Length: 456aa MW: 50715.5 Da PI: 6.3082 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.2 | 6.3e-13 | 256 | 301 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h +++r RR+++N++f++Lr+l+P++ +K++ a+i+ A+ YI++L MDP0000124536 256 KHLAIDRGRRQQLNDKFFTLRSLIPNP-----TKNDRASIVGDAIGYINEL 301 7999***********************.....9***************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.583 | 252 | 301 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.14E-14 | 255 | 320 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.20E-10 | 255 | 305 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.2E-12 | 255 | 310 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-10 | 255 | 301 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.0E-10 | 258 | 307 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 456 aa Download sequence Send to blast |
MYQDTVSCNF DPNPLPPPPP PQQPQVLMEE LSFHHHHQNH HSSVEMELQN ELGFNVDNPY 60 NTTTDHDTNI NNSHLVSFEH PTNWDNNIHG VHDQIQQQFP DGTTSTPYPQ PPDLLNLFSL 120 PRCSPSSLLQ NSSITFTNTL PKTSTSFGFL GDLPSAVDTP LGTASSVLYD PLLHLNLPPQ 180 PPMFRELLQS LPHGYTLPGS GNGSLFSSGG DEREGSGGGI YPDHGTINGS IFENGVMEFS 240 REMGSIGRGR NLKGSKHLAI DRGRRQQLND KFFTLRSLIP NPTKNDRASI VGDAIGYINE 300 LLRTVDELKL LVEKKRCGTE RSKRHKTEQD GGAGDENCNA KSEPHDQSYN NGSLRSSWLQ 360 RKSKDTEVDI RIIHDEVTIK LVQRKKINLL LSVSRLLDEL QLDLHHVAGG HIGNSYSFLF 420 NTKMYEGSCL YASAIAGKFI EVLDRQYSAV PPTSSY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009373826.2 | 0.0 | PREDICTED: transcription factor bHLH10-like | ||||
Refseq | XP_009373851.2 | 0.0 | PREDICTED: transcription factor bHLH10-like | ||||
TrEMBL | A0A498KLS3 | 0.0 | A0A498KLS3_MALDO; Uncharacterized protein | ||||
STRING | XP_008345255.1 | 0.0 | (Malus domestica) | ||||
STRING | XP_008354804.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3743 | 32 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31220.1 | 2e-67 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000124536 |