PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000124019
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 539aa    MW: 58335.9 Da    PI: 7.1693
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000124019genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.98.9e-09341388455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  MDP0000124019 341 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 388
                    8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.50E-10335392No hitNo description
SuperFamilySSF474591.15E-16335406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663337387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16337406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-6341388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-9343393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MEKDSLAKPT WNPSGFSMEM QSNELNCAPQ QLPNSFFNAN WDNSLDQTDP FESALSSIVS  60
SPIAAAGNGG EGGDMIRELI GRLGSISNSG EISPHSYISS NYNNSSTNTS CYSTPLNSSQ  120
RGSLPIENLA QFQADPGFVE RAARFSCFGG GGGGNFGGQF NLNEAELAYR SMARIDSGKL  180
SRVSSNQSLK VAAGSQLAVQ ETNKSSPLDG NSAPDKKFIS RFSRASTPEN GELGDSREGS  240
SVSQQIPGGD LSMKAEIVTN SRKRKSAARG KAKDSSSSHP VKDAKVVAEK EEPNAKKSKN  300
DEASGKEKET SKAKTKANSE TPEAPKDYIH VRARRGQATD SHSLAERVRR EKISERMKFL  360
QDLVPGCNKV TGKAVMLDEI INYVQSLQCQ VEFLSMKLST VNPRMELNME ALLSKDIIQS  420
RGSLQNALYQ LDSSVPSFPF GYQPQQLPPL HSSGISSATD TQFPANPLNS ALRQSHGMQL  480
PAFDRFGEAA SQAYSKKFIF QMPTLFEDDL QSVVQMGFGQ IQQESFHGSG ASAQMKVEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1260265SRKRKS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.100090.0bud| cell culture| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894011e-176KP689401.1 Prunus pseudocerasus isolate Unigene19909 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008337491.10.0transcription factor bHLH77
TrEMBLA0A498JZS90.0A0A498JZS9_MALDO; Uncharacterized protein
STRINGXP_008337491.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48560.11e-66bHLH family protein