PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000123407
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 583aa    MW: 65197.5 Da    PI: 9.3268
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000123407genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.12.8e-1718103899
                    -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
             B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                    s  l+s rl +p +f+++++g +  s  + l  +sg  W+v+l   ++ g+ +l  GW  Fv+++ ++ gDf+vF++d++ +f  +v +f++
  MDP0000123407  18 SADLSSERLKIPXRFMRHMEGRT--SGLVLLFGPSGSAWSVEL--IQQNGGLFLHHGWPAFVRDHYVECGDFLVFRYDSDLCF--TVLIFDQ 103
                    66788999********8888884..4489999***********..888889**************************999999..9999987 PP
2B344.43e-142473261496
                    T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
             B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      l +p kf  +h   ++++++++l++ +g+sW+v+    ++   +++l +GW  Fv+ n+++ gD+++F+l+++ ef  +v++
  MDP0000123407 247 YTLNIPYKFSVAHL--PNCKVKIVLQNWKGESWTVNSVPsTRVHTSHTLCGGWMAFVRCNDIQLGDICIFELVRECEF--RVHI 326
                    4689*****99996..45999***************9445555667999************************99999..4544 PP
3B342.41.3e-13471563196
                    EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                    f+k++++ + + s  l +p +f +++  +     ++++ l++++g  W+v+ i + k++  +++ +GW  Fv+ n+++ gD+++F+l+g++e    
  MDP0000123407 471 FVKIMKKFNISGSYTLKVPYQFSTQYlpN----YKTEILLRNSKGGCWTVNSIPDSKGRVvHTFCGGWMAFVRGNDINFGDVCIFELVGKDEM--Q 560
                    6777877788888899*******999533....4468***************7655555479999**********************985444..5 PP

                    EEE CS
             B3  94 vkv 96 
                    v++
  MDP0000123407 561 VHI 563
                    554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.1E-238106IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.0E-229106IPR015300DNA-binding pseudobarrel domain
CDDcd100171.15E-1711102No hitNo description
PROSITE profilePS5086314.07111104IPR003340B3 DNA binding domain
SMARTSM010198.6E-1213104IPR003340B3 DNA binding domain
PfamPF023622.7E-1518103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.4E-22227328IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-23227327IPR015300DNA-binding pseudobarrel domain
CDDcd100172.32E-17232326No hitNo description
PROSITE profilePS5086313.155234330IPR003340B3 DNA binding domain
SMARTSM010191.7E-11234330IPR003340B3 DNA binding domain
PfamPF023623.7E-11247326IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-20463564IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-22464565IPR015300DNA-binding pseudobarrel domain
CDDcd100171.47E-16469563No hitNo description
SMARTSM010192.1E-10471569IPR003340B3 DNA binding domain
PROSITE profilePS5086312.407471567IPR003340B3 DNA binding domain
PfamPF023624.6E-11471563IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MAKEARNVRS PHFFAFYSAD LSSERLKIPX RFMRHMEGRT SGLVLLFGPS GSAWSVELIQ  60
QNGGLFLHHG WPAFVRDHYV ECGDFLVFRY DSDLCFTVLI FDQSACEKEA AFRFGYGQDS  120
SNFEKCMXVG RKRGMEEAAS SGNKPVDGAX KKMRHGLSQL QSECIDEGQE EATCSKETNP  180
HENPGLDVVP NAAKASIQNV CGKGDGLNVN GRVCMQMSSA HEVAPVFSSS NPYFVRIIKS  240
FNISGSYTLN IPYKFSVAHL PNCKVKIVLQ NWKGESWTVN SVPSTRVHTS HTLCGGWMAF  300
VRCNDIQLGD ICIFELVREC EFRVHIQKGE TSSWLSPGLA VTTHKTIKGL SKKIKGNSPK  360
VHSKSIREIA DKLSSKMYQD AAFINDTRKY GSSSRSLTKV ALSQSKVASK KLGHLHFSNL  420
NWFLNHKMET VNXRKKVVED ELDSQKRGLR IKLTLDEERV ARSFTSCFPN FVKIMKKFNI  480
SGSYTLKVPY QFSTQYLPNY KTEILLRNSK GGCWTVNSIP DSKGRVVHTF CGGWMAFVRG  540
NDINFGDVCI FELVGKDEMQ VHISGVGKKG FDHLGGQATS DVV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.107030.0bud| leaf| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009365640.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like
TrEMBLA0A498J6W40.0A0A498J6W4_MALDO; Uncharacterized protein
STRINGXP_009365640.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114703238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-15B3 family protein