PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000121522
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 287aa    MW: 30727.9 Da    PI: 6.8012
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000121522genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.3e-12238283555
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  MDP0000121522 238 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 283
                    99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.15E-14231287No hitNo description
SuperFamilySSF474599.42E-16231286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39233282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-15235286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-9238283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-10239287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MWMWYSQPCS REMQEMNSLL NASASASQLS LQDHHHLQHH QQQQSHSHSS QMHPQIPNPS  60
ASHFDSATHD DFLEQMLSTL GPSWASAADD APPPSSSNPD NVVFSYDDSA TLASKFRSQQ  120
ISAGSGANKS ASASAAAAAA MMLQHQLMMS RSGAADSGFS PMGLSLGNNG DFDRSNNDVG  180
DVSSFKSPNT VGGQLQAQNY GGAGAAMNQA PAGGSAGAAP AQPKPRVRAR RGQATDPHSI  240
AERLRRERIA ERMKALQELV PNANKTDKAS MLDEIIDYVK FLQLQVK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242247RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.53121e-163bud| cell culture| fruit| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009366166.11e-156PREDICTED: transcription factor bHLH66-like
TrEMBLA0A498HVG80.0A0A498HVG8_MALDO; Uncharacterized protein
STRINGXP_008367760.11e-160(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47783352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.11e-27LJRHL1-like 2