 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
MDP0000121221 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
| Family |
SBP |
| Protein Properties |
Length: 279aa MW: 31556.9 Da PI: 9.8397 |
| Description |
SBP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| MDP0000121221 | genome | GDR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SBP | 85 | 9.1e-27 | 115 | 189 | 11 | 78 |
-TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS.......EEETTT--SS--S-STTTT-------S--- CS
SBP 11 lseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr.......fhelsefDeekrsCrrrLakhnerrrkkqa 78
l +ak+yhrrhkvC+vhska+++lv +++ fCqqCsr h+l+e De+krsC + La+hn+rrrk ++
MDP0000121221 115 LGNAKDYHRRHKVCDVHSKATKALVGNVMXLFCQQCSRgltlmdrXHALRELDEGKRSCCTGLAGHNRRRRKMHP 189
789*********************************9644444448**************************875 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 279 aa
Download sequence Send
to blast |
MEREILAIHK GENCPQRIVT CEFCEFPLPA IDLAEHQEVC GNRTELCHLC NRYIRLRERY 60
NHEIRCNGVS DNTAGPSRDA RPAERRQGPP RRQANEFSRK RLIFTVALTG IAVLLGNAKD 120
YHRRHKVCDV HSKATKALVG NVMXLFCQQC SRGLTLMDRX HALRELDEGK RSCCTGLAGH 180
NRRRRKMHPD SAVNGGSLNN ESGSSFAMNV KLKSGILFIC SFANCELRSV VIVDRRSHFV 240
FPVSHXGTHR RRSMVGTYXX VNVLSDSLKG KVHSMPNET
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ul4_A | 8e-16 | 115 | 186 | 20 | 84 | squamosa promoter binding protein-like 4 |
