PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000120805

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Dof

Protein Properties

Length: 361aa MW: 39762.6 Da PI: 10.0171

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000120805	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.1	1.1e-39	16	76	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprC+s+ntkfCyynny+lsqPr+fCk+C+ryWtkGGalrn+PvGgg+rkn k+s MDP0000120805 16 EQEQLKCPRCESSNTKFCYYNNYNLSQPRHFCKNCKRYWTKGGALRNIPVGGGSRKNTKKS 76 57899****************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-26	6	68	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.2E-33	18	74	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.18	20	74	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	22	58	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MQDPATFQPM KPQFPEQEQL KCPRCESSNT KFCYYNNYNL SQPRHFCKNC KRYWTKGGAL 60 RNIPVGGGSR KNTKKSSSSA SKRSSSTSSS SLSSSSAAAA QNPDPQPDRT RAYGSKVDQD 120 RGVMDFSGSF GSLLTSNGQF GSLLEGLNPN GSGLKLMQMG DFGENLDAAG NVMNSDPGPG 180 LEGQSHGNPE SYMGLQNGDP STSSCWNGAN GWPDLAIYTP ASKIIDFADF SAREILVCNR 240 TKFNLQPIGI LFQTPKSLPQ SHFFTTWQGP LAYFIYKPKY KKHTNKKMDL HSNPIAQNIV 300 LRPEQEKHQT HHSYSCHKLK EASGTKPTSS RAITSKPKEG GGVNIRSKAL LTFQEKREKL 360 R

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MQDPATFQPM KPQFPEQEQL KCPRCESSNT KFCYYNNYNL SQPRHFCKNC KRYWTKGGAL  60
RNIPVGGGSR KNTKKSSSSA SKRSSSTSSS SLSSSSAAAA QNPDPQPDRT RAYGSKVDQD  120
RGVMDFSGSF GSLLTSNGQF GSLLEGLNPN GSGLKLMQMG DFGENLDAAG NVMNSDPGPG  180
LEGQSHGNPE SYMGLQNGDP STSSCWNGAN GWPDLAIYTP ASKIIDFADF SAREILVCNR  240
TKFNLQPIGI LFQTPKSLPQ SHFFTTWQGP LAYFIYKPKY KKHTNKKMDL HSNPIAQNIV  300
LRPEQEKHQT HHSYSCHKLK EASGTKPTSS RAITSKPKEG GGVNIRSKAL LTFQEKREKL  360
R

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028953225.1	1e-161	dof zinc finger protein DOF3.1
TrEMBL	A0A498H7I8	1e-159	A0A498H7I8_MALDO; Uncharacterized protein
STRING	XP_009344438.1	1e-134	(Pyrus x bretschneideri)
STRING	XP_009344445.1	1e-134	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6181	33	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	1e-35	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	MDP0000120805