PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000120361

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

FAR1

Protein Properties

Length: 594aa MW: 67956.6 Da PI: 6.9206

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000120361	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	44.1	6.7e-14	123	197	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++YA++vGFs+ + + ++ k +g i++ +f Cs+e +++++ ++ C+a+ ++++++ + w+ tk++++HnH+++ MDP0000120361 123 LYDAYARNVGFSTHVGQFTRAKPDGPIVTWDFACSREVFKRKNVES--------------CNAMXRIERKDANSWVTTKFVEDHNHSMV 197 59************************************999877..............************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.4E-11	123	197	IPR004330	FAR1 DNA binding domain
Pfam	PF04434	3.9E-11	476	522	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.152	488	524	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.6E-8	499	526	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 594 aa Download sequence Send to blast
MALQFPVPKL RLEETRKLVS ALLIPRSVPS QDICEQPLTP WRLDLTCFIV PSVGVTTTVM 60 ETEVLVDAEG ENLEHHMAEN NEPDKGQKQN VKENFSGREV NIQDDSKPHV GMEFESEDAA 120 KILYDAYARN VGFSTHVGQF TRAKPDGPIV TWDFACSREV FKRKNVESCN AMXRIERKDA 180 NSWVTTKFVE DHNHSMVSPS KVHYLRPRRH FAGATKNTSE TLDATTDSYF SMDGNHVSYE 240 PNRGGRSVSP VEPNHSARNL RPVNCIRPCS RKRTLGRDAQ NLLNYFKKMQ AENPGFFYAI 300 QLDDENRMTN VFWVDARSRT AYNHFGDAVI FDTMYRPNHY QVPFAPFTGV NHHGQKAVYN 360 ARKQWAPVYF HGTFFAAISS NQGISSFFDG YVNQQMSIPM FFKQYERALE HSLEKEIEAD 420 IDTMCTTPVL KTPSPMEQQA ANLYTKKVFA KFQEELVETF VYTANKIEGD GIVSKYRVAK 480 YEHDDKAYMV ILNVSEIKAS CSCQMFEYSG ILCRHILTVF TVTNVLTLPS HYILKRWTRN 540 AKSWVGPDEQ SSDLQGIETL TMRFNNLCRE AIKYAEEGAV GLETYNAAMM LYER

Sequence ? help Back to Top

Protein Sequence Length: 594 aa Download sequence Send to blast

MALQFPVPKL RLEETRKLVS ALLIPRSVPS QDICEQPLTP WRLDLTCFIV PSVGVTTTVM  60
ETEVLVDAEG ENLEHHMAEN NEPDKGQKQN VKENFSGREV NIQDDSKPHV GMEFESEDAA  120
KILYDAYARN VGFSTHVGQF TRAKPDGPIV TWDFACSREV FKRKNVESCN AMXRIERKDA  180
NSWVTTKFVE DHNHSMVSPS KVHYLRPRRH FAGATKNTSE TLDATTDSYF SMDGNHVSYE  240
PNRGGRSVSP VEPNHSARNL RPVNCIRPCS RKRTLGRDAQ NLLNYFKKMQ AENPGFFYAI  300
QLDDENRMTN VFWVDARSRT AYNHFGDAVI FDTMYRPNHY QVPFAPFTGV NHHGQKAVYN  360
ARKQWAPVYF HGTFFAAISS NQGISSFFDG YVNQQMSIPM FFKQYERALE HSLEKEIEAD  420
IDTMCTTPVL KTPSPMEQQA ANLYTKKVFA KFQEELVETF VYTANKIEGD GIVSKYRVAK  480
YEHDDKAYMV ILNVSEIKAS CSCQMFEYSG ILCRHILTVF TVTNVLTLPS HYILKRWTRN  540
AKSWVGPDEQ SSDLQGIETL TMRFNNLCRE AIKYAEEGAV GLETYNAAMM LYER

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008375417.2	0.0	protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_017188898.2	0.0	protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_028961065.1	0.0	protein FAR1-RELATED SEQUENCE 3-like
Swissprot	Q9ZVC9	1e-100	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A2P5RKE8	0.0	A0A2P5RKE8_GOSBA; Uncharacterized protein
STRING	XP_008347024.1	0.0	(Malus domestica)
STRING	XP_008375417.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	7e-93	FAR1-related sequence 3

Link Out ? help Back to Top
Phytozome	MDP0000120361

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]