PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000120171

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

FAR1

Protein Properties

Length: 450aa MW: 51821.3 Da PI: 9.9814

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000120171	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	22.4	4e-07	177	214	53	90
FAR1 53 rtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 + ++r++C+a ++ ++k+gk+++ +++ +HnH+l+ MDP0000120171 177 YIQLVSRVHCQAXMTCLLKKNGKFKIVSFDANHNHALV 214 456789******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-5	177	214	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.235	347	394	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	7.5E-6	347	394	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.2E-4	369	396	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
GGQHVKGSKR ETGEQLAWES QKGEATREAA LGGSGKERXH XTGGVWERDA GRRLPLGSVE 60 NQKNKREVST GREKRKRRDR GGVRENQRQT AALRQQIART EERGRAQQLR SMQKIREGTR 120 KGKKRGVSVS TAPGGQEEGR XKEVMENKEP TRLDSESIPS DEDDLQENDE PVEGTTYIQL 180 VSRVHCQAXM TCLLKKNGKF KIVSFDANHN HALVRNXXKH MLKINRKMSQ AQXALVYGRH 240 TFTANMMSTQ RSDSMNNVLK KYLKPSHSVL LFFEHYERLL EDKQYQELIA DFKMMQTTPM 300 LLTNVEMLRH AAEIYALEVY RLFQKEYIRI LNYNIYKVSK SGMTYEYKVT YNGKPQEHFV 360 KFEALTEGIA CSCMKFSFAG ILCCHALKVL DKKNVKRIPH DYIFKAMGSE GSDHAKESIG 420 RRYSHLCRNF WEIASLVAEH EKFTTYAHEC

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

GGQHVKGSKR ETGEQLAWES QKGEATREAA LGGSGKERXH XTGGVWERDA GRRLPLGSVE  60
NQKNKREVST GREKRKRRDR GGVRENQRQT AALRQQIART EERGRAQQLR SMQKIREGTR  120
KGKKRGVSVS TAPGGQEEGR XKEVMENKEP TRLDSESIPS DEDDLQENDE PVEGTTYIQL  180
VSRVHCQAXM TCLLKKNGKF KIVSFDANHN HALVRNXXKH MLKINRKMSQ AQXALVYGRH  240
TFTANMMSTQ RSDSMNNVLK KYLKPSHSVL LFFEHYERLL EDKQYQELIA DFKMMQTTPM  300
LLTNVEMLRH AAEIYALEVY RLFQKEYIRI LNYNIYKVSK SGMTYEYKVT YNGKPQEHFV  360
KFEALTEGIA CSCMKFSFAG ILCCHALKVL DKKNVKRIPH DYIFKAMGSE GSDHAKESIG  420
RRYSHLCRNF WEIASLVAEH EKFTTYAHEC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021806094.1	1e-96	protein FAR1-RELATED SEQUENCE 5-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16859	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-28	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	MDP0000120171