PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_98656g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 537aa    MW: 59684.5 Da    PI: 7.4832
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_98656g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.42.1e-07200219626
                    -SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                    C++f++ G C++Gd C +aHg
  MA_98656g0010 200 CPDFRK-GSCRRGDACEYAHG 219
                    9*****.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.7E-4194220IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.667195221IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4200221IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-5200219IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.085229253IPR000571Zinc finger, CCCH-type
SMARTSM0035611229252IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MPGVSAEQHF FTGSPSSVFG NRCCPVSRAF ESQDLPKSFY AEPPELSPHS LTNMEYLQSL  60
NLFSETSPNS EKSTYSKDSA SVQKLFNKSL SFGSNGLGVD FGFNTTAMES ENFLVSPRTV  120
IESPDGISSL HKFLPSNNEE EASWPAVDAY SCDEFRMYEF KVRRCMRGRS HDWTECPFAH  180
PGEKARRRDP RRFHYSGTGC PDFRKGSCRR GDACEYAHGV FECWLHPARY RTQPCKDGRN  240
CRRRVCFFAH TPEQLRLLPG ASQAQSHATT NFGNRNSFPM RNAVSGSYDG SPLRYAVSAA  300
ASLDGAFGYD GFDGNASPRG HLNYLCKAKA KAKASQISSP TSTLIGHSYS PPPLSPPLSP  360
SASPPISPDS CLDSHVNYAN SPIKSYLNSD TNTAPGPFTP RRHLEKLISI PPPNLDPSPL  420
SPAEHSVAPS SKLIIDGLIS SLQRMEINRE TPPWFQQQQQ FNLPRRSCLS LPCAPRWDDD  480
AWEIEATEDG SIERVESGKH LRAKIYGRLT RESTLQDKNN INTEYSPDLG WVNELVM
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1150500.0BT115050.1 Picea glauca clone GQ03607_P03 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024376481.11e-115zinc finger CCCH domain-containing protein 30-like
TrEMBLB8LMK41e-126B8LMK4_PICSI; Uncharacterized protein
STRINGPP1S297_45V6.11e-115(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11701644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.12e-76C3H family protein