PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Basic Information? help Back to Top

TF ID

MA_97537g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

MYB_related

Protein Properties

Length: 382aa MW: 42341.8 Da PI: 5.2029

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_97537g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.4	1.4e-07	19	41	24	47
HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqky 47 W++Ia++++ gRt++++k+ w+++ MA_97537g0010 19 WSAIASHLP-GRTDNEIKNVWNTH 41 *******.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.411	1	42	IPR017877	Myb-like domain
SuperFamily	SSF46689	1.39E-6	17	46	IPR009057	Homeodomain-like
Pfam	PF00249	7.6E-6	18	41	IPR001005	SANT/Myb domain
CDD	cd00167	5.70E-5	19	42	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.2E-11	19	42	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MVKFSANNYG PLHLSSHLWS AIASHLPGRT DNEIKNVWNT HFKKRFLQIG VDLVTHAPRR 60 YNVSSCHAAV SIPDIHDEET DHHSQSHGCK SESVKMAFKK EGNINESLAR QPLQVTKALH 120 DQGPSDNSSH IQKTPDDQNM INSHQHEAYY NLNSSGNNYS YSSDSSRVPS PFGLCSATDN 180 KEKTNSEKLA SVMPFDYIRT GEKKMLAVDY TSLLHSSYTD SLKLTLDNGE VNWNPLAGNQ 240 QNFVGLGCGE FQEDDRAVVQ QAYPEGNLAY YSSMLSLSSA TENNTLGDQA VACSFSNGAA 300 AGVSGQQIKV KVEPSGTNFS VEQFIELADL TTGTSMESKN NIYDLWPYMN LVDQDEGMEY 360 WVNLLRQVGP LPFFETISPP DL

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MVKFSANNYG PLHLSSHLWS AIASHLPGRT DNEIKNVWNT HFKKRFLQIG VDLVTHAPRR  60
YNVSSCHAAV SIPDIHDEET DHHSQSHGCK SESVKMAFKK EGNINESLAR QPLQVTKALH  120
DQGPSDNSSH IQKTPDDQNM INSHQHEAYY NLNSSGNNYS YSSDSSRVPS PFGLCSATDN  180
KEKTNSEKLA SVMPFDYIRT GEKKMLAVDY TSLLHSSYTD SLKLTLDNGE VNWNPLAGNQ  240
QNFVGLGCGE FQEDDRAVVQ QAYPEGNLAY YSSMLSLSSA TENNTLGDQA VACSFSNGAA  300
AGVSGQQIKV KVEPSGTNFS VEQFIELADL TTGTSMESKN NIYDLWPYMN LVDQDEGMEY  360
WVNLLRQVGP LPFFETISPP DL

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT112294	0.0	BT112294.1 Picea glauca clone GQ03313_B21 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	C0PSI2	0.0	C0PSI2_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	4e-17	myb domain protein 93