PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_96585g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 577aa    MW: 64856.3 Da    PI: 7.5493
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_96585g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.37.5e-15351397455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  A+eY+k+L+
  MA_96585g0010 351 NHVLAERRRREKLNERFIILRTLVPFV-----TKMDKASILGDAIEYVKQLR 397
                    7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.0E-211184IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474592.75E-19347414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.688347396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.40E-15350401No hitNo description
Gene3DG3DSA:4.10.280.105.3E-19351416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-12351396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-18353402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MGPLQIHLKS IYSKLPGRAL TKRHHVWLSQ ANEADSKLFS RAILAKSARI QTVACIPLAD  60
GVLEIGSTEL IREDIGLIHQ VTSLLADHSK PVCSEQSTSN PHSENASRAL PPDQLSMQPP  120
DGIVFEEQNV KATEYNSDNA HENAHIPMQV SGLQSEKTVT EFGQNGSEVM QLDMSPEDCS  180
NDIGSELQVT GGNSCMQVKH STNAWPDISH GIQSSGTQQY LDQGSDDESG HYSKTVSTIL  240
QQQRPSQWTE TTTLQLVRGN INPQDITQRC AFSCWTGNGG VSIQKSMNPQ WVLKYILSIQ  300
KSMNPQWVLK YILFSVPNLH SRDRDESSPK LREGENGCRV RRSGQDDITV NHVLAERRRR  360
EKLNERFIIL RTLVPFVTKM DKASILGDAI EYVKQLRRRI QDLEVRSKQM EAELKKSAEP  420
RKQLSTTSQE KIVRQRSGGT TNNNNVDQEL VSSCRNFSDH SDQQQYKISR FEKRKIRVLE  480
RSEPLTIIDD CSTDVQVSII EHEALVELQC PWREGLLLDI MQTLSNLLFE THSVQSSVVN  540
NTFVAKIRAK VKAANIGEKP TITKVKNAVL ECIPSRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-14350416773Transcription factor MYC2
5gnj_B3e-14350416773Transcription factor MYC2
5gnj_E3e-14350416773Transcription factor MYC2
5gnj_F3e-14350416773Transcription factor MYC2
5gnj_G3e-14350416773Transcription factor MYC2
5gnj_I3e-14350416773Transcription factor MYC2
5gnj_M3e-14350416773Transcription factor MYC2
5gnj_N3e-14350416773Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1355360ERRRRE
2356361RRRREK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU1312260.0KU131226.1 Picea abies transcription factor bHLH-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A167V9480.0A0A167V948_PICAB; Transcription factor bHLH-1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP52261116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.33e-50bHLH family protein