PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_96585g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | bHLH | ||||||||
Protein Properties | Length: 577aa MW: 64856.3 Da PI: 7.5493 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 46.3 | 7.5e-15 | 351 | 397 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +ErrRR+++N++f Lr+l+P +K++Ka+iL A+eY+k+L+ MA_96585g0010 351 NHVLAERRRREKLNERFIILRTLVPFV-----TKMDKASILGDAIEYVKQLR 397 7999**********************8.....8*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 3.0E-21 | 11 | 84 | IPR025610 | Transcription factor MYC/MYB N-terminal |
SuperFamily | SSF47459 | 2.75E-19 | 347 | 414 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.688 | 347 | 396 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.40E-15 | 350 | 401 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.3E-19 | 351 | 416 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-12 | 351 | 396 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.8E-18 | 353 | 402 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 577 aa Download sequence Send to blast |
MGPLQIHLKS IYSKLPGRAL TKRHHVWLSQ ANEADSKLFS RAILAKSARI QTVACIPLAD 60 GVLEIGSTEL IREDIGLIHQ VTSLLADHSK PVCSEQSTSN PHSENASRAL PPDQLSMQPP 120 DGIVFEEQNV KATEYNSDNA HENAHIPMQV SGLQSEKTVT EFGQNGSEVM QLDMSPEDCS 180 NDIGSELQVT GGNSCMQVKH STNAWPDISH GIQSSGTQQY LDQGSDDESG HYSKTVSTIL 240 QQQRPSQWTE TTTLQLVRGN INPQDITQRC AFSCWTGNGG VSIQKSMNPQ WVLKYILSIQ 300 KSMNPQWVLK YILFSVPNLH SRDRDESSPK LREGENGCRV RRSGQDDITV NHVLAERRRR 360 EKLNERFIIL RTLVPFVTKM DKASILGDAI EYVKQLRRRI QDLEVRSKQM EAELKKSAEP 420 RKQLSTTSQE KIVRQRSGGT TNNNNVDQEL VSSCRNFSDH SDQQQYKISR FEKRKIRVLE 480 RSEPLTIIDD CSTDVQVSII EHEALVELQC PWREGLLLDI MQTLSNLLFE THSVQSSVVN 540 NTFVAKIRAK VKAANIGEKP TITKVKNAVL ECIPSRC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 3e-14 | 350 | 416 | 7 | 73 | Transcription factor MYC2 |
5gnj_B | 3e-14 | 350 | 416 | 7 | 73 | Transcription factor MYC2 |
5gnj_E | 3e-14 | 350 | 416 | 7 | 73 | Transcription factor MYC2 |
5gnj_F | 3e-14 | 350 | 416 | 7 | 73 | Transcription factor MYC2 |
5gnj_G | 3e-14 | 350 | 416 | 7 | 73 | Transcription factor MYC2 |
5gnj_I | 3e-14 | 350 | 416 | 7 | 73 | Transcription factor MYC2 |
5gnj_M | 3e-14 | 350 | 416 | 7 | 73 | Transcription factor MYC2 |
5gnj_N | 3e-14 | 350 | 416 | 7 | 73 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 355 | 360 | ERRRRE |
2 | 356 | 361 | RRRREK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU131226 | 0.0 | KU131226.1 Picea abies transcription factor bHLH-1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A167V948 | 0.0 | A0A167V948_PICAB; Transcription factor bHLH-1 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5226 | 11 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63650.3 | 3e-50 | bHLH family protein |