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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_96029g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | GRAS | ||||||||
Protein Properties | Length: 698aa MW: 77604.6 Da PI: 5.7063 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 249 | 1.8e-76 | 390 | 658 | 2 | 285 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 ++Ll++ + v+ ++le aqa+Larl++ +sp+g+++qR++ yf+eAL +++ + s s+ + +++++a k fse+sPi+ f+++t MA_96029g0010 390 LQQLLDATKYVELNSLEIAQAILARLNQYVSPRGKALQRATYYFKEALGGLR-P-LQQTN---SKSYLSPLQLVHKINACKNFSEISPIPYFANFT 480 589*********************************************8632.2.23344...44444444589********************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 aNq +lea+e+ +++HiiDfd++ G+QW+++lq++a Rp+gpp lR+T+vg ++ e++ ++e+L fAe+l++pf f+v+ + edl+ ++ MA_96029g0010 481 ANQVLLEALETVDKIHIIDFDMGLGGQWASFLQEIALRPGGPPALRLTAVGY----ESMEMHLIRENLCTFAENLNIPFTFQVVEIPQNEDLNHSM 572 ****************************************************....99*************************9999********* PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285 L++k+gE++aVn +l ++ ll ++ s++ ++L+l+++l+Pk+vvvv++e + ++sF+++fleal++y+ lf+slea + + ++ ++ MA_96029g0010 573 LNLKEGETIAVNYSLGMQGLL-SKDSIA----SILHLINRLRPKIVVVVDNENEQAGSSFAQKFLEALHFYALLFESLEAV-HMNMDTIEMI 658 ********************9.444444....5*********************************************876.3333444444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 38.719 | 363 | 698 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.2E-74 | 390 | 658 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048768 | Biological Process | root hair cell tip growth | ||||
GO:0051301 | Biological Process | cell division |
Sequence ? help Back to Top |
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Protein Sequence Length: 698 aa Download sequence Send to blast |
MTEAVGASCK VPTVAHFNPL CKLRTSGVIV VARAPKTPIL LNTETRPPLL NLKLVQSNSI 60 PAQTTNKRPY VRSEYQSEPT SVLDIRSPSP TSTLSVSFGG STDGGFFREN ACDGQLLDCI 120 GVMDSKDGGS WQLQNVIRND NGFQVPETET VNVNPNVSMG MEYLENILLQ SPESNNNSQI 180 PCLMGEPCLM GSEYPLHGIK AEEAVLQQTQ FHEAADSQFS EFLCVNSDIN SFTFYGDNGG 240 HTLSPFALNP PSTAVFPPSS ALFTPNIHGP NPPPLSFAPD FKPFKVPMDE KHPELQLPYG 300 ANPSYPEKNV VFPMPAAPRG HMGVAHEGFP EFEKSLHWQQ IQQREFQPAW KTMINRGVRD 360 PLFPPVKQEW SPRTHQGKVD LDEVQKSAIL QQLLDATKYV ELNSLEIAQA ILARLNQYVS 420 PRGKALQRAT YYFKEALGGL RPLQQTNSKS YLSPLQLVHK INACKNFSEI SPIPYFANFT 480 ANQVLLEALE TVDKIHIIDF DMGLGGQWAS FLQEIALRPG GPPALRLTAV GYESMEMHLI 540 RENLCTFAEN LNIPFTFQVV EIPQNEDLNH SMLNLKEGET IAVNYSLGMQ GLLSKDSIAS 600 ILHLINRLRP KIVVVVDNEN EQAGSSFAQK FLEALHFYAL LFESLEAVHM NMDTIEMIEK 660 SSRNKFSSLV GNDKFLSRSL LGMLIMLFNH VLTMCLVN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 4e-36 | 400 | 649 | 30 | 281 | Protein SCARECROW |
5b3h_A | 3e-36 | 400 | 649 | 29 | 280 | Protein SCARECROW |
5b3h_D | 3e-36 | 400 | 649 | 29 | 280 | Protein SCARECROW |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ711055 | 0.0 | KJ711055.1 Pinus tabuliformis clone PtHAM2 HAM2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K0M6Y2 | 0.0 | A0A0K0M6Y2_PINTB; HAM2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00150.1 | 3e-52 | GRAS family protein |