PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_95747g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 326aa    MW: 36614.7 Da    PI: 5.2024
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_95747g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.53.7e-142570148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg++T++E++ +++++  lG++ W+tIa+ ++ g t++++k++w ++l
    MA_95747g0010 25 RGSFTQQEEQTIIQLHGILGNR-WSTIASQLP-GITANEIKNFWTTHL 70
                     89********************.*********.***********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.333119IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.5E-11631IPR009057Homeodomain-like
SuperFamilySSF466897.27E-19678IPR009057Homeodomain-like
PROSITE profilePS5129422.2522074IPR017930Myb domain
SMARTSM007175.8E-122472IPR001005SANT/Myb domain
PfamPF002491.7E-122570IPR001005SANT/Myb domain
CDDcd001671.66E-82770No hitNo description
Gene3DG3DSA:1.10.10.601.2E-183274IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MQGLLRCGKS CRLRWTNYLR PDIKRGSFTQ QEEQTIIQLH GILGNRWSTI ASQLPGITAN  60
EIKNFWTTHL KKRLLKMGLD LSTHAPIGEA NPTAPEGFEA LALTRHTAQW ENARLEAEAR  120
LSRESLLISS NSAAGYDTNR TVEIITMPSD NPPPDFFLKI WNSEAGKVFR KGSHHPKGGG  180
DDSVLSFTQN SCDQSLSPND KDNGSPLCNS ASFEWIGDCN VKTPQVLSCL ADMTMGHTED  240
KAHEDLLDFP ELLLDFPDND DNNNNTNSIQ SESSQRQPSS PWPELHDEDY WSNLSFTAHP  300
SAHSRDFAPD FRHPYVCLLL YFELSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-1767440108B-MYB
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A222UAM73e-74A0A222UAM7_GINBI; R2R3MYB15
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.14e-62myb domain protein 17