PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

MYB

Protein Properties

Length: 240aa MW: 27507.3 Da PI: 8.636

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_94467g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.3	1.8e-13	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed ll + ++ +G g+W+ +++ g+ R++k+c++rw++yl MA_94467g0010 14 RGPWTAKEDNLLTRWIEWHGEGDWRNLPEKAGLLRCGKSCRLRWLNYL 61 89****************************99**********97 PP
2	Myb_DNA-binding	50.4	5.1e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l MA_94467g0010 67 RGNISSDEEDLIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 112 78999***************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.787	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	7.49E-28	11	108	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-10	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	3.2E-12	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.9E-20	15	68	IPR009057	Homeodomain-like
CDD	cd00167	1.22E-8	16	61	No hit	No description
PROSITE profile	PS51294	25.407	62	116	IPR017930	Myb domain
SMART	SM00717	2.8E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.2E-14	67	112	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-24	69	116	IPR009057	Homeodomain-like
CDD	cd00167	1.59E-10	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MGRTPCCSQV GLHRGPWTAK EDNLLTRWIE WHGEGDWRNL PEKAGLLRCG KSCRLRWLNY 60 LRPTIKRGNI SSDEEDLIIR LHRLLGNRWS LIAGRLPGRT DNEIKNYWNS HLRKKLRKQG 120 IDPATHKPLE SKHHVHKNTE DDHTHENNKA SSLEDGQVQT GQNEEVGQAR ESPSTDYQYA 180 ATLLMQQPVH LPKANRYISF PPGINSNHDD SEGMDSHIKK SMQGAMDDLR HSSAEPLNXX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	8e-23	12	116	5	108	B-MYB
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007218760.1	8e-77	myb-related protein 308
Swissprot	Q38850	3e-72	MYB5_ARATH; Transcription repressor MYB5
TrEMBL	A0A222UAF4	2e-81	A0A222UAF4_GINBI; R2R3MYB10
STRING	EMJ19959	3e-76	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	1e-74	myb domain protein 5

Publications ? help Back to Top
Ranocha P,Francoz E,Burlat V,Dunand C Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion. Plant Signal Behav, 2014. 9(11): p. e977734 [PMID:25531128]