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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_94287g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | GRAS | ||||||||
Protein Properties | Length: 583aa MW: 65228.5 Da PI: 5.2598 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 318.6 | 1.4e-97 | 202 | 578 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkfsh 95 ++lLl+c a++++d +laq++++ l+++as +gdp+qR++++f++AL ar ar +++a ++ +++l++ +l f++++P+++f++ MA_94287g0010 202 EQLLLHCSSALENNDVTLAQQIMWVLNNIASAEGDPNQRVTSCFLRALIARAAR----MANA-HVG------DTKRLSVIELagFVDLTPWHRFGF 286 79****************************************************....2222.222......334555555556************ PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl......v 182 N aI eaveg + vHi+Df+i +++QWp+L+++L++Rpegpp +R+T+ + ++ + ++ee+g rL++fA++ +vpfef+++ MA_94287g0010 287 SSSNGAIAEAVEGYSVVHILDFGIAHCMQWPTLIDSLSKRPEGPPYIRLTVSCARPPVpplLSMSYEELGTRLSNFARSRNVPFEFRAIppdpneE 382 **************************************************987766667899999************************9988654 PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.......erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 +++le++ L++++gEal+Vn++++lh+++de+v+++ +rde+L++++s +P++v++v+++++++s+s++ r+ +a++y + fd+l MA_94287g0010 383 FLVVDQLEPSILDLREGEALVVNCQFRLHYIPDETVDQQIscsssscQRDEFLRIIRSFEPTIVTLVDEDSNLTSTSLVSRLKSAFNYLWIPFDAL 478 4578999*************************9998877666667899************************************************ PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367 ++ lpr+s +r+ +E +g +i+n++a eg +r+er e+++kW +r+++a F+++ +se++++++k++l +++ g+ +++e++ l+l+Wk++++ MA_94287g0010 479 DTFLPRDSIQRQQYESD-VGYKIQNIIAFEGHQRIERLESKAKWTQRMRKACFQSICFSEDTVAEVKSMLDEHA-AGWGLKKEEDDLLLTWKGHNV 572 *****************.9*******************************************************.8999***************** PP GRAS 368 vsvSaW 373 v++++W MA_94287g0010 573 VFATVW 578 ****** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 48.451 | 175 | 560 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.7E-95 | 202 | 578 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 583 aa Download sequence Send to blast |
MKGALEIMGI NHQADFQLSR HAPVLFSDKR MKEESRQFSV HNDAAALSPP DCFEDTGGHI 60 GWILSESSEL GQPSSVGLTS VNCQESNIDV NSIKTRQQSL QFTDTSDRPD STGHVQYMVK 120 NSPKLKTIDS KLAFSPRLRS PSVATTQREW NAMTDLNANS SHHYEELSTA PADQDQSWPL 180 LGVSIARGLG NLGACHDASC MEQLLLHCSS ALENNDVTLA QQIMWVLNNI ASAEGDPNQR 240 VTSCFLRALI ARAARMANAH VGDTKRLSVI ELAGFVDLTP WHRFGFSSSN GAIAEAVEGY 300 SVVHILDFGI AHCMQWPTLI DSLSKRPEGP PYIRLTVSCA RPPVPPLLSM SYEELGTRLS 360 NFARSRNVPF EFRAIPPDPN EEFLVVDQLE PSILDLREGE ALVVNCQFRL HYIPDETVDQ 420 QISCSSSSCQ RDEFLRIIRS FEPTIVTLVD EDSNLTSTSL VSRLKSAFNY LWIPFDALDT 480 FLPRDSIQRQ QYESDVGYKI QNIIAFEGHQ RIERLESKAK WTQRMRKACF QSICFSEDTV 540 AEVKSMLDEH AAGWGLKKEE DDLLLTWKGH NVVFATVWVP SHL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 1e-49 | 197 | 581 | 83 | 475 | Protein SHORT-ROOT |
5b3h_B | 4e-50 | 197 | 581 | 29 | 421 | Protein SHORT-ROOT |
5b3h_E | 4e-50 | 197 | 581 | 29 | 421 | Protein SHORT-ROOT |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ068056 | 0.0 | FJ068056.1 Pinus taeda isolate 8023 anonymous locus 0_2222_01 genomic sequence. | |||
GenBank | FJ068058 | 0.0 | FJ068058.1 Pinus taeda isolate 8019 anonymous locus 0_2222_01 genomic sequence. | |||
GenBank | FJ068060 | 0.0 | FJ068060.1 Pinus taeda isolate 8012 anonymous locus 0_2222_01 genomic sequence. | |||
GenBank | FJ068062 | 0.0 | FJ068062.1 Pinus taeda isolate 8008 anonymous locus 0_2222_01 genomic sequence. | |||
GenBank | FJ068064 | 0.0 | FJ068064.1 Pinus taeda isolate 8007 anonymous locus 0_2222_01 genomic sequence. | |||
GenBank | FJ068069 | 0.0 | FJ068069.1 Pinus taeda isolate 8013 anonymous locus 0_2222_01 genomic sequence. | |||
GenBank | FJ068070 | 0.0 | FJ068070.1 Pinus taeda isolate 8011 anonymous locus 0_2222_01 genomic sequence. | |||
GenBank | FJ068071 | 0.0 | FJ068071.1 Pinus taeda isolate 8021 anonymous locus 0_2222_01 genomic sequence. | |||
GenBank | FJ068073 | 0.0 | FJ068073.1 Pinus taeda isolate 8020 anonymous locus 0_2222_01 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002279517.3 | 1e-179 | PREDICTED: scarecrow-like protein 32 | ||||
Swissprot | Q9SN22 | 1e-138 | SCL32_ARATH; Scarecrow-like protein 32 | ||||
TrEMBL | A0A438KQL4 | 1e-177 | A0A438KQL4_VITVI; Scarecrow-like protein 32 | ||||
TrEMBL | A5ANJ0 | 1e-177 | A5ANJ0_VITVI; Uncharacterized protein | ||||
STRING | VIT_07s0129g00340.t01 | 1e-178 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2499 | 15 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49950.1 | 1e-136 | GRAS family protein |