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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_9294379g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 225aa MW: 25200.3 Da PI: 6.7775 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.4 | 2.1e-19 | 26 | 75 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+Wv+eIr+p+ r +r++lg+f+t+e+Aa+a++ a+ l+g MA_9294379g0010 26 TYRGVRRRE-WGKWVSEIREPK----RkTRIWLGSFDTPEMAARAYDVAAFHLKG 75 69****999.**********83....45**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 24.012 | 26 | 84 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-20 | 26 | 85 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-30 | 26 | 85 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.1E-13 | 26 | 75 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-34 | 26 | 90 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-10 | 27 | 38 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.31E-30 | 27 | 86 | No hit | No description |
PRINTS | PR00367 | 1.5E-10 | 49 | 65 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MKRIRTQDQG AASPPRERTL KVQYPTYRGV RRREWGKWVS EIREPKRKTR IWLGSFDTPE 60 MAARAYDVAA FHLKGKKRTL LNFPELIDYL PRPISLSPRH VQAAAAEAAV AFYPKIQERG 120 SSRSPPVSNE PSSFSSSSHR LCTVINSDFE TASAEVSGQT DTGNSSSVCR PTEAVGECVA 180 VEEDLFETFN LFTNLAEALM LSPPPLCSIN EEENNLEEGF LWSGF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-17 | 8 | 85 | 2 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ117101 | 2e-59 | FJ117101.1 Pinus taeda isolate 4346 anonymous locus UMN_6348_01 genomic sequence. | |||
GenBank | FJ117103 | 2e-59 | FJ117103.2 Pinus taeda isolate 4361 anonymous locus UMN_6348_01 genomic sequence. | |||
GenBank | FJ117104 | 2e-59 | FJ117104.2 Pinus taeda isolate 4349 anonymous locus UMN_6348_01 genomic sequence. | |||
GenBank | FJ117105 | 2e-59 | FJ117105.2 Pinus taeda isolate 4355 anonymous locus UMN_6348_01 genomic sequence. | |||
GenBank | FJ117106 | 2e-59 | FJ117106.2 Pinus taeda isolate 4347 anonymous locus UMN_6348_01 genomic sequence. | |||
GenBank | FJ117107 | 2e-59 | FJ117107.2 Pinus taeda isolate 4348 anonymous locus UMN_6348_01 genomic sequence. | |||
GenBank | FJ117108 | 2e-59 | FJ117108.2 Pinus taeda isolate 4359 anonymous locus UMN_6348_01 genomic sequence. | |||
GenBank | FJ117112 | 2e-59 | FJ117112.1 Pinus taeda isolate 4345 anonymous locus UMN_6348_01 genomic sequence. | |||
GenBank | FJ117113 | 2e-59 | FJ117113.1 Pinus taeda isolate 4356 anonymous locus UMN_6348_01 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | D5ABJ6 | 1e-105 | D5ABJ6_PICSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 1e-35 | ERF family protein |