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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_9225682g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB_related | ||||||||
Protein Properties | Length: 895aa MW: 99794.3 Da PI: 9.8244 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.7 | 2.3e-07 | 14 | 42 | 4 | 32 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg 32 W t+E++ll+ av+++G+ +W++I++++ MA_9225682g0010 14 WGTWEELLLAGAVERHGTQNWELISEELR 42 **************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.295 | 6 | 64 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-4 | 10 | 45 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.15E-4 | 14 | 60 | No hit | No description |
Pfam | PF00249 | 1.7E-6 | 14 | 44 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF47370 | 8.9E-21 | 534 | 654 | IPR001487 | Bromodomain |
SMART | SM00297 | 1.9E-17 | 541 | 652 | IPR001487 | Bromodomain |
CDD | cd04369 | 1.73E-16 | 551 | 647 | No hit | No description |
Gene3D | G3DSA:1.20.920.10 | 1.3E-17 | 555 | 652 | IPR001487 | Bromodomain |
Pfam | PF00439 | 4.8E-12 | 557 | 632 | IPR001487 | Bromodomain |
PROSITE profile | PS50014 | 12.016 | 563 | 633 | IPR001487 | Bromodomain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 895 aa Download sequence Send to blast |
MNGRRREEEE ERMWGTWEEL LLAGAVERHG TQNWELISEE LRARIVSPYV FSPEACKVKY 60 DALRRRFNGH SENPDRSNDD GNSVLLEVLR ARRIAQLKTE EIPLKNDSIG SLESELRRLK 120 AGEDSKQGSE RSKDRSSAGS FTEAAPDGSE TVAWASLAKH QRIETVGEID KSEGIQSDRI 180 GPDQESNPSP VERGSPKRDP DRNEEKKAAE SVPVPVPVPV PVPVPASGPL PASRTEGGAK 240 NQHPISEVHP SSPLDSFYGS SETLADEKEN RRSRHDFVES KDSNIKGRRL RTDLALKKTD 300 LRSCRRPSGN GSHRVLMPHK PKTEDFDAET AHRSNPQQNP DDDDDDYPPP GSSPVKSEPD 360 RNGDGDQDQA SIGCTENSEL HTVDTNASER SSAAIRRARR KQGKKNPAAF GVTTTDSETS 420 RQKHDEVRTE EGSAESMDIE RKEFKGTRDE CQKGLTVDSD VLSSANPAEI SNRKGTKAFS 480 SSREASESGH RHRHGQGQGH YKECEEFTDA WNQTARSSGD SHMEDRMEGT DEIETSPMSR 540 RSRREPKVPG KLLPLLECLR TITSHKFGSL FKHKLESQNK QQYKNMIRRH MDLGMIRARL 600 EEGSYSGSLE FFRDLLLVFN NALIFYHKSS QENGAAWVLR QLANNEMAKI FQTEALLKQE 660 GPSTRKRDPR PTPGPSANPS KFNPSSRKRN ARPLSGGGRV VGRPKSTTRL NTREEKYNSQ 720 EPPKEAIEVS SSTGLRPEIE RGENFDAEAT NISKLPKVGD EKKTSGSSIQ PKKGFHIDPK 780 KNSNTKSKKS TISNTPLVES RNNSNSHKNN HHNNNGRSPE HLLGKGAAMK EEKGIRPPEP 840 THKQRGADRD QLPLKRGVGR PSKHAKRASG AYDQLPSKTT GDPEASSRLR KKLRK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 887 | 893 | RLRKKLR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D6R6X0 | 1e-107 | A0A0D6R6X0_ARACU; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60110.1 | 1e-23 | DNA-binding bromodomain-containing protein |