PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_92168g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | bHLH | ||||||||
Protein Properties | Length: 425aa MW: 47208.5 Da PI: 6.8909 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.5 | 4.9e-13 | 260 | 309 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r+ h + Er+RR+ +N+ fe+ r+llP++ +K +K++++ + ++YI+ L MA_92168g0010 260 QREIHIQSERQRRKGMNHLFERMRSLLPNP----TQKTDKSTTVSEIINYIQAL 309 6899*************************9....79****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.8E-15 | 259 | 319 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-13 | 259 | 323 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.224 | 259 | 309 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.20E-12 | 259 | 314 | No hit | No description |
Pfam | PF00010 | 2.3E-10 | 260 | 309 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-10 | 265 | 315 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence Send to blast |
MCPCAHFSHG SSKPMGFLAL ISMRQPSKPI SRYCRSDVLY VTKTEKSMLN NMLHFQSQLA 60 AGPKLEPLST VNHPDDPLRS VLNISSSYQS PWMNPSCFSS PESVPFDEKA LELSEMDTLV 120 HQMGDIESWG NLDQVHGCVR PLNAASMQAC SIVSDPQLEI LNVFLKKHNP AEDVHVNLNP 180 DSDFLPRVRS ANVLQMDAVV QQDAFGSILS DEQEPMENKS KDHMLKVPAK RSSGTRPAQL 240 RPTKRGAAAA PQQDVSGISQ REIHIQSERQ RRKGMNHLFE RMRSLLPNPT QKTDKSTTVS 300 EIINYIQALH QNLEDLNKKR AKMLPSPRGG TVHVKTEPTS AESIQSECTG SEDSLPVSSE 360 EECTRQTPHV TLHFNGNDIY VTVSCLNKAN LLAAIIFVVE DHNLQVISAN FSATDTVAFH 420 CLHVK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT115277 | 0.0 | BT115277.1 Picea glauca clone GQ03613_E07 mRNA sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1226 | 15 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01260.3 | 1e-11 | bHLH family protein |