PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MA_917739g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 430aa MW: 46601.7 Da PI: 5.5986 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.8 | 0.00022 | 370 | 412 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 r + R +++++a++ Lr+++P+ ++ a++Le A +++ksLq MA_917739g0010 370 RRKLRKEKVKKAINLLRSIVPEgH------SMDTAAVLEVASQHLKSLQ 412 5688999***************55......79****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.652 | 362 | 411 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.01E-7 | 368 | 420 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.05E-4 | 368 | 416 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 9.0E-6 | 372 | 423 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 430 aa Download sequence Send to blast |
MESPDIQVSC SNIPSPSLEH TGLESKLPWT VQESCGLPIL SGMEHLPQSG QHLGAFEVNA 60 FQQRAHLRSE QCVSASAYPA PPRCPEQLKS VDGNPRAHSA NSAGLAAGFT GSGVRVIVHP 120 SLVYEFPNLL PDSAKGLDKI NVHNRVPQKE SISQMPSVYN STDRGTGLLA YREHMAPAFT 180 ALQGIRKRRW LSAEAAGNGF VACSKQEETG SQMSCNGSSR GGYQSQSHED TRDLEALLGS 240 DEEEDDSTGH TPSEAITNDQ QSGTQDEAHI SNGIPTKKRR CECMEFGEQE VDFIPTAIQE 300 TAVLNGKCSS DGVCFPPVAS QESGIQLECC NTVKDSDYRD EQFCDYSTDN MTGNGSSNNS 360 ASKVGQPSSR RKLRKEKVKK AINLLRSIVP EGHSMDTAAV LEVASQHLKS LQLKLERLEA 420 NQNDKTLSKP |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT071310 | 0.0 | BT071310.1 Picea sitchensis clone WS02824_A22 unknown mRNA. | |||
GenBank | EF677759 | 0.0 | EF677759.1 Picea sitchensis clone WS02774_I09 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | C0PSI6 | 0.0 | C0PSI6_PICSI; Uncharacterized protein |