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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_905082g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | Trihelix | ||||||||
Protein Properties | Length: 287aa MW: 32740 Da PI: 6.8423 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 30.5 | 9.4e-10 | 142 | 208 | 2 | 67 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikeg 67 W++ + +L+ ++m +++rg+l k++W ++++++ + + s +qCk kw+ l+k y k k + MA_905082g0010 142 WPNTAIDVLLLKFEDMCFNVSRGRLGKTHWGQIADAVNAVCSaNYSGVQCKYKWNRLKKSYNKAKLH 208 9************************************88776377*****************99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 6.3E-10 | 142 | 222 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MGDSVKTPQL LEEPSTTTSP HHQQHNNKKG STSSIVEPES MTLTHYNLNT VQQSPRASSS 60 QYHHQQHHFR SKQESIACIR SVLQNFMASP SIQSQNPIDN RPPLSLKRKE MTEXXIDNRP 120 PLSLKRKEMT ESPSRAQKEA LWPNTAIDVL LLKFEDMCFN VSRGRLGKTH WGQIADAVNA 180 VCSANYSGVQ CKYKWNRLKK SYNKAKLHGE TSRFLFYKRV ERIVHRASGQ KLHEEEEEEE 240 EEEEEMASED DDVDSICEAA SIESKPSSAS MSATEDDDVH RRPARLL |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT114769 | 0.0 | BT114769.1 Picea glauca clone GQ03601_N05 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | D5AEE5 | 1e-150 | D5AEE5_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14180.1 | 5e-08 | sequence-specific DNA binding transcription factors |