PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_89624g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 393aa    MW: 44016.2 Da    PI: 6.984
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_89624g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-17149192146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r+++++eE+++l+ a++++G++ W+ Iar ++ gRt++ +k++w+ 
    MA_89624g0010 149 RKPFSEEEEDRLLAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 192
                      789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001670.00361121141No hitNo description
Gene3DG3DSA:1.10.10.602.1E-14121154IPR009057Homeodomain-like
SuperFamilySSF466891.4E-25122201IPR009057Homeodomain-like
PROSITE profilePS500905.064123143IPR017877Myb-like domain
PROSITE profilePS5129426.661144198IPR017930Myb domain
SMARTSM007172.5E-15148196IPR001005SANT/Myb domain
PfamPF002491.9E-14149191IPR001005SANT/Myb domain
CDDcd001674.78E-12151191No hitNo description
Gene3DG3DSA:1.10.10.601.2E-17155198IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MCLYQVEEGP QWLQGSCNMV TPPKPLTFDL FGKDDVVELE KYGNPFAIYH VSAPSPVSSL  60
DCLPLTFDLF QKDDVVELEK YGNGDAACNS SPHNDDDTNG ENCYGQDHYM KANDTMGSEE  120
NLIAEKLQGR SGKSCRLRWF NQLDPRINRK PFSEEEEDRL LAAHRLYGNK WAMIARLFPG  180
RTDNAVKNHW HVIMARKLRE QSSAYRRRKP QVVQQRREKS DACINEPNSH YQFTSIPGGS  240
SSSINFLQPS RGFSSLSSAD FSLASSHTRI PSYYAIKSAS AFGAVQSLDY FSGAKGTANL  300
PVERRSLLDK FPIPEQQAAN GKACFHFMPP AINATDPKLG LERRYMDAEK ASSVLSATDS  360
SQEYSKSWIF NKSAEKDIST NRPFIDFLGV GAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-2412219832108B-MYB
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1197530.0BT119753.1 Picea glauca clone GQ04109_K05 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A222UAI83e-85A0A222UAI8_GINBI; R2R3MYB19
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.13e-51myb domain protein 105