PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_8911g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 613aa    MW: 66375.6 Da    PI: 8.1133
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_8911g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.19.8e-11210235227
                   -S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                   +++ C +++ t tCk+G+ CkF H++
  MA_8911g0010 210 GEKDCTHYMMTRTCKFGADCKFDHPF 235
                   7889********************95 PP
2zf-CCCH33.38.1e-11267286827
                   GGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   8 ffartGtCkyGdrCkFaHgp 27 
                   ++++tG+Ck+G++CkF+H++
  MA_8911g0010 267 YYMKTGICKFGSKCKFHHPK 286
                   9*****************96 PP
3zf-CCCH37.24.8e-12317343127
                   --S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                   +++++C ff +tG+CkyG++CkF H++
  MA_8911g0010 317 PGEPECAFFVKTGICKYGAKCKFDHPK 343
                   5799*********************96 PP
4zf-CCCH34.63.3e-11385410126
                   --S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                   ++++ C+f+ +tG Ck+G++C+++H+
  MA_8911g0010 385 PGEPDCPFYVKTGSCKFGSNCRYNHP 410
                   5789*********************9 PP
5zf-CCCH36.48.7e-12452477126
                   --S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                   +++++C f+ +tG+Ck+G++CkF+H+
  MA_8911g0010 452 PGEPECTFYIKTGECKFGPSCKFHHP 477
                   5799*********************9 PP
6zf-CCCH38.61.8e-12497521327
                   S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                   + +C+f+++tG CkyG +CkF H+p
  MA_8911g0010 497 ETICPFYLKTGVCKYGVNCKFDHPP 521
                   679********************96 PP
7zf-CCCH42.11.4e-13546571227
                   -S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                   +++ C+f+++tGtCkyG++CkF H+p
  MA_8911g0010 546 GEATCPFYMKTGTCKYGATCKFDHPP 571
                   5789********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.803208236IPR000571Zinc finger, CCCH-type
SMARTSM003560.0064208235IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-8210235IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.019259287IPR000571Zinc finger, CCCH-type
SMARTSM003560.068261286IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-8267286IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4267286IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.662316344IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-6316343IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9318343IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-6320344IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4322342IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.173384412IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-7384411IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-9386410IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5389411IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-4390409IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.328451479IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-6451478IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-8453477IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-6455481IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-4457476IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.685494522IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-7494521IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-10496521IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-6497521IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-5499519IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.525544572IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-7544571IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-11546571IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-5548571IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-5550569IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MGHQLYNSTQ SLGSASRGNP VLGYNGSRAL EPPMYPARPY DPPAESRYFS AEQFSNSTQL  60
DKSGGRYMYG DRVPNERHPA ETGNRLGSLG MDRYVPSDTT QRADSSSDTA FYKGGDAAGF  120
GSTGPYFSSR HSSSLVSPPQ QTQWPGAEPR GSMPGGVTGV KRPNEEVSQT LLGSHNTFGQ  180
NEALSSVNAL AKRPRMDGSS DLPIYPQRPG EKDCTHYMMT RTCKFGADCK FDHPFWVPAG  240
GIPNWKEVPS VATNSESPPE RPGEPEYYMK TGICKFGSKC KFHHPKDRLA TLKSDENVDG  300
SEVKPAASDV VTLPERPGEP ECAFFVKTGI CKYGAKCKFD HPKDKGGART EGQGVSGVVN  360
GKTENIAAAI KPATMHNTKG LPIRPGEPDC PFYVKTGSCK FGSNCRYNHP DRILVNAPPA  420
IMPFAAQDQP LVGYSGMLPQ HSLGAPIPPQ RPGEPECTFY IKTGECKFGP SCKFHHPLNR  480
VNANLDPRAS LPRREGETIC PFYLKTGVCK YGVNCKFDHP PPGELDTARA QPPVKLTLAG  540
FPRREGEATC PFYMKTGTCK YGATCKFDHP PPGEAVAKAV AMAVTTEDNL EDEDKMGSGN  600
VVGAKATDEN LKV
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1150640.0BT115064.1 Picea glauca clone GQ03608_F12 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004148293.11e-145PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q31e-126C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A0D6QVA80.0A0A0D6QVA8_ARACU; Uncharacterized protein
STRINGXP_004148293.11e-144(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP67541519
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-122floral homeotic protein (HUA1)